Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | B9J09_RS10830 | Genome accession | NZ_CP020870 |
| Coordinates | 2248596..2249033 (+) | Length | 145 a.a. |
| NCBI ID | WP_046418469.1 | Uniprot ID | - |
| Organism | Xylella fastidiosa subsp. pauca strain De Donno | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2243596..2254033
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B9J09_RS10805 (B9J09_10805) | coaE | 2243709..2244332 (-) | 624 | WP_046418843.1 | dephospho-CoA kinase | - |
| B9J09_RS10810 (B9J09_10810) | pilD | 2244344..2245207 (-) | 864 | WP_010894958.1 | A24 family peptidase | Machinery gene |
| B9J09_RS10815 (B9J09_10815) | - | 2245214..2246405 (-) | 1192 | Protein_2023 | type II secretion system F family protein | - |
| B9J09_RS10820 (B9J09_10820) | pilA/pilAI | 2246854..2247300 (+) | 447 | WP_010894960.1 | pilin | Machinery gene |
| B9J09_RS10830 (B9J09_10830) | pilA | 2248596..2249033 (+) | 438 | WP_046418469.1 | pilin | Machinery gene |
| B9J09_RS10840 (B9J09_10840) | pilB | 2249871..2251604 (+) | 1734 | WP_046418464.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| B9J09_RS10845 (B9J09_10845) | - | 2251698..2253110 (-) | 1413 | WP_046418462.1 | sigma-54 dependent transcriptional regulator | - |
Sequence
Protein
Download Length: 145 a.a. Molecular weight: 15064.52 Da Isoelectric Point: 8.5119
>NTDB_id=189724 B9J09_RS10830 WP_046418469.1 2248596..2249033(+) (pilA) [Xylella fastidiosa subsp. pauca strain De Donno]
MKKQQGFTLIELMIVIAIIAILAAIALPMYQNYVARSQVTAGLAEISPGRAQAEIRIAEARATVLPADIGLRTPTPRCAI
TVNIAANADSIITCTLIGNGQVNNRFVRLTRGVDTTAGAGGQWTCTTDVAEALRPVGCTGVATGG
MKKQQGFTLIELMIVIAIIAILAAIALPMYQNYVARSQVTAGLAEISPGRAQAEIRIAEARATVLPADIGLRTPTPRCAI
TVNIAANADSIITCTLIGNGQVNNRFVRLTRGVDTTAGAGGQWTCTTDVAEALRPVGCTGVATGG
Nucleotide
Download Length: 438 bp
>NTDB_id=189724 B9J09_RS10830 WP_046418469.1 2248596..2249033(+) (pilA) [Xylella fastidiosa subsp. pauca strain De Donno]
ATGAAAAAGCAACAAGGCTTCACTTTGATCGAGCTGATGATCGTCATTGCGATCATCGCCATCCTGGCAGCGATCGCTCT
GCCCATGTACCAAAATTATGTCGCCAGGTCTCAAGTCACAGCGGGACTGGCCGAAATCTCACCAGGCAGAGCACAAGCCG
AAATCCGTATTGCCGAGGCACGGGCAACAGTTCTTCCGGCCGATATCGGTCTACGCACCCCAACCCCTCGTTGCGCCATT
ACTGTCAACATCGCCGCCAATGCTGACAGCATAATTACCTGTACGCTTATTGGTAATGGCCAAGTCAACAATCGATTCGT
CAGGTTGACTCGCGGTGTCGACACCACCGCAGGCGCAGGAGGTCAGTGGACCTGTACCACAGACGTTGCCGAAGCATTGA
GACCAGTAGGCTGCACTGGTGTTGCTACTGGTGGTTAA
ATGAAAAAGCAACAAGGCTTCACTTTGATCGAGCTGATGATCGTCATTGCGATCATCGCCATCCTGGCAGCGATCGCTCT
GCCCATGTACCAAAATTATGTCGCCAGGTCTCAAGTCACAGCGGGACTGGCCGAAATCTCACCAGGCAGAGCACAAGCCG
AAATCCGTATTGCCGAGGCACGGGCAACAGTTCTTCCGGCCGATATCGGTCTACGCACCCCAACCCCTCGTTGCGCCATT
ACTGTCAACATCGCCGCCAATGCTGACAGCATAATTACCTGTACGCTTATTGGTAATGGCCAAGTCAACAATCGATTCGT
CAGGTTGACTCGCGGTGTCGACACCACCGCAGGCGCAGGAGGTCAGTGGACCTGTACCACAGACGTTGCCGAAGCATTGA
GACCAGTAGGCTGCACTGGTGTTGCTACTGGTGGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Acinetobacter baumannii strain A118 |
44.755 |
98.621 |
0.441 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
43.262 |
97.241 |
0.421 |
| pilA | Pseudomonas aeruginosa PAK |
37.58 |
100 |
0.407 |
| pilA | Vibrio cholerae strain A1552 |
36.42 |
100 |
0.407 |
| pilA | Vibrio cholerae C6706 |
36.42 |
100 |
0.407 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
36.42 |
100 |
0.407 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
40.845 |
97.931 |
0.4 |
| pilA | Haemophilus influenzae Rd KW20 |
36.364 |
100 |
0.386 |
| pilA2 | Legionella pneumophila str. Paris |
40 |
96.552 |
0.386 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
39.286 |
96.552 |
0.379 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
38.732 |
97.931 |
0.379 |
| comP | Acinetobacter baylyi ADP1 |
34.615 |
100 |
0.372 |