Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | dqs_RS17810 | Genome accession | NZ_CP016210 |
| Coordinates | 3892091..3893224 (+) | Length | 377 a.a. |
| NCBI ID | WP_011767191.1 | Uniprot ID | A1KB79 |
| Organism | Azoarcus olearius strain DQS-4 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3887091..3898224
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| dqs_RS17785 (dqs_3607) | - | 3888325..3888621 (-) | 297 | WP_011767186.1 | DUF167 domain-containing protein | - |
| dqs_RS17790 (dqs_3608) | - | 3888626..3889207 (-) | 582 | WP_011767187.1 | YggT family protein | - |
| dqs_RS17795 (dqs_3609) | proC | 3889226..3890050 (-) | 825 | WP_065341294.1 | pyrroline-5-carboxylate reductase | - |
| dqs_RS17800 (dqs_3610) | - | 3890124..3890837 (-) | 714 | WP_065341295.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| dqs_RS17805 (dqs_3611) | pilT | 3890964..3892004 (+) | 1041 | WP_011767190.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| dqs_RS17810 (dqs_3612) | pilU | 3892091..3893224 (+) | 1134 | WP_011767191.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| dqs_RS17815 (dqs_3613) | - | 3893413..3896130 (+) | 2718 | WP_065341296.1 | type VI secretion system Vgr family protein | - |
Sequence
Protein
Download Length: 377 a.a. Molecular weight: 42065.48 Da Isoelectric Point: 6.3990
>NTDB_id=186202 dqs_RS17810 WP_011767191.1 3892091..3893224(+) (pilU) [Azoarcus olearius strain DQS-4]
MERDQALKFMHDLLRLMLQKNGSDLFINPGFPPAIKVDGRIVPQSNQALAPQHTAELARAIMNDRQSAEFEATKECNFAI
SPAGIGRFRANAYIQQGRVALVLRTIAQKIPTIDELGLPPVLRDIGMTKRGLVIFVGGTGTGKTTSLAAMVDFRNENSYG
HIITIEDPIEYVHPHKNCIVSQREVGIDTDNWEAALKNTLRQAPDVILMGEIRDRETMDYAIAFAETGHLCLATLHANSA
NQAIDRIINFFPEDRRQQLLMDLSLNLRAMVSQRLLPLKGRKGRVPAVEVLLNSPLVSDLIFKGEVPGIKEIMKRSRELG
MQTFDQALFDLYEAELISYEDALRNADSVNDLRLQIKLNSKLGDKDLVSGIQNLDIV
MERDQALKFMHDLLRLMLQKNGSDLFINPGFPPAIKVDGRIVPQSNQALAPQHTAELARAIMNDRQSAEFEATKECNFAI
SPAGIGRFRANAYIQQGRVALVLRTIAQKIPTIDELGLPPVLRDIGMTKRGLVIFVGGTGTGKTTSLAAMVDFRNENSYG
HIITIEDPIEYVHPHKNCIVSQREVGIDTDNWEAALKNTLRQAPDVILMGEIRDRETMDYAIAFAETGHLCLATLHANSA
NQAIDRIINFFPEDRRQQLLMDLSLNLRAMVSQRLLPLKGRKGRVPAVEVLLNSPLVSDLIFKGEVPGIKEIMKRSRELG
MQTFDQALFDLYEAELISYEDALRNADSVNDLRLQIKLNSKLGDKDLVSGIQNLDIV
Nucleotide
Download Length: 1134 bp
>NTDB_id=186202 dqs_RS17810 WP_011767191.1 3892091..3893224(+) (pilU) [Azoarcus olearius strain DQS-4]
ATGGAACGCGACCAGGCCCTGAAATTCATGCACGACCTGCTGCGGCTGATGCTGCAGAAGAACGGTTCCGACCTCTTCAT
CAATCCCGGCTTTCCCCCGGCGATCAAGGTCGACGGACGTATCGTGCCGCAATCCAACCAGGCGCTGGCGCCGCAGCACA
CTGCGGAACTTGCGCGCGCGATCATGAACGACCGCCAGTCGGCCGAATTCGAAGCCACCAAGGAGTGCAACTTCGCGATC
TCGCCCGCGGGCATCGGCCGCTTCCGGGCCAATGCCTACATCCAGCAAGGCCGCGTGGCGCTGGTGTTGCGCACGATCGC
GCAGAAGATCCCGACCATCGACGAACTCGGCCTGCCGCCGGTATTGCGCGACATCGGCATGACCAAGCGCGGCCTGGTGA
TCTTCGTCGGCGGCACCGGCACCGGCAAGACCACCTCGCTGGCGGCCATGGTCGATTTCCGCAACGAGAACAGCTACGGC
CACATCATCACGATCGAAGATCCGATCGAGTACGTGCACCCGCACAAGAACTGCATCGTGTCGCAACGCGAAGTCGGCAT
CGACACCGACAACTGGGAAGCGGCGCTGAAGAACACCCTGCGCCAGGCGCCGGACGTGATCCTGATGGGCGAAATCCGTG
ACCGCGAAACCATGGATTACGCGATCGCCTTCGCCGAAACCGGCCACCTCTGCCTTGCCACGCTGCACGCCAACAGCGCC
AACCAGGCGATCGACCGCATCATCAACTTCTTCCCGGAAGACCGCCGCCAGCAACTGCTGATGGATTTGTCATTGAACCT
GCGGGCGATGGTTTCGCAGCGCCTGCTGCCGCTCAAGGGGCGCAAGGGCCGCGTGCCCGCCGTCGAGGTGCTGCTCAACT
CCCCGCTGGTGTCAGACCTGATCTTCAAGGGCGAGGTGCCAGGCATCAAGGAGATCATGAAGCGCTCCCGCGAACTGGGC
ATGCAGACCTTCGACCAGGCCTTGTTCGACCTCTACGAAGCCGAGCTGATCAGCTACGAAGACGCGTTGCGCAATGCCGA
TTCGGTGAATGACCTGCGGCTGCAGATCAAGCTCAACAGCAAGCTGGGCGACAAGGACCTCGTCTCGGGTATCCAGAACC
TCGACATCGTCTGA
ATGGAACGCGACCAGGCCCTGAAATTCATGCACGACCTGCTGCGGCTGATGCTGCAGAAGAACGGTTCCGACCTCTTCAT
CAATCCCGGCTTTCCCCCGGCGATCAAGGTCGACGGACGTATCGTGCCGCAATCCAACCAGGCGCTGGCGCCGCAGCACA
CTGCGGAACTTGCGCGCGCGATCATGAACGACCGCCAGTCGGCCGAATTCGAAGCCACCAAGGAGTGCAACTTCGCGATC
TCGCCCGCGGGCATCGGCCGCTTCCGGGCCAATGCCTACATCCAGCAAGGCCGCGTGGCGCTGGTGTTGCGCACGATCGC
GCAGAAGATCCCGACCATCGACGAACTCGGCCTGCCGCCGGTATTGCGCGACATCGGCATGACCAAGCGCGGCCTGGTGA
TCTTCGTCGGCGGCACCGGCACCGGCAAGACCACCTCGCTGGCGGCCATGGTCGATTTCCGCAACGAGAACAGCTACGGC
CACATCATCACGATCGAAGATCCGATCGAGTACGTGCACCCGCACAAGAACTGCATCGTGTCGCAACGCGAAGTCGGCAT
CGACACCGACAACTGGGAAGCGGCGCTGAAGAACACCCTGCGCCAGGCGCCGGACGTGATCCTGATGGGCGAAATCCGTG
ACCGCGAAACCATGGATTACGCGATCGCCTTCGCCGAAACCGGCCACCTCTGCCTTGCCACGCTGCACGCCAACAGCGCC
AACCAGGCGATCGACCGCATCATCAACTTCTTCCCGGAAGACCGCCGCCAGCAACTGCTGATGGATTTGTCATTGAACCT
GCGGGCGATGGTTTCGCAGCGCCTGCTGCCGCTCAAGGGGCGCAAGGGCCGCGTGCCCGCCGTCGAGGTGCTGCTCAACT
CCCCGCTGGTGTCAGACCTGATCTTCAAGGGCGAGGTGCCAGGCATCAAGGAGATCATGAAGCGCTCCCGCGAACTGGGC
ATGCAGACCTTCGACCAGGCCTTGTTCGACCTCTACGAAGCCGAGCTGATCAGCTACGAAGACGCGTTGCGCAATGCCGA
TTCGGTGAATGACCTGCGGCTGCAGATCAAGCTCAACAGCAAGCTGGGCGACAAGGACCTCGTCTCGGGTATCCAGAACC
TCGACATCGTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
62.363 |
96.552 |
0.602 |
| pilU | Acinetobacter baylyi ADP1 |
58.974 |
93.103 |
0.549 |
| pilU | Vibrio cholerae strain A1552 |
53.056 |
95.491 |
0.507 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
43.017 |
94.96 |
0.408 |
| pilT | Pseudomonas stutzeri DSM 10701 |
41.791 |
88.859 |
0.371 |
| pilT | Acinetobacter baylyi ADP1 |
40.95 |
89.39 |
0.366 |
| pilT | Legionella pneumophila strain Lp02 |
41.692 |
87.798 |
0.366 |
| pilT | Legionella pneumophila strain ERS1305867 |
41.692 |
87.798 |
0.366 |
| pilT | Pseudomonas aeruginosa PAK |
41.194 |
88.859 |
0.366 |
| pilT | Acinetobacter nosocomialis M2 |
41.088 |
87.798 |
0.361 |
| pilT | Acinetobacter baumannii D1279779 |
41.088 |
87.798 |
0.361 |
| pilT | Acinetobacter baumannii strain A118 |
41.088 |
87.798 |
0.361 |