Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LLUC06_RS04825 | Genome accession | NZ_CP015902 |
| Coordinates | 954500..954934 (+) | Length | 144 a.a. |
| NCBI ID | WP_081213448.1 | Uniprot ID | A0A1V0P1Y2 |
| Organism | Lactococcus lactis subsp. lactis strain UC06 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 949500..959934
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LLUC06_RS04775 (LLUC06_0916) | - | 950082..950669 (-) | 588 | WP_081213441.1 | hypothetical protein | - |
| LLUC06_RS04780 (LLUC06_0917) | - | 950680..951219 (-) | 540 | WP_081213442.1 | XRE family transcriptional regulator | - |
| LLUC06_RS04785 (LLUC06_0918) | - | 951448..951666 (+) | 219 | WP_081213443.1 | hypothetical protein | - |
| LLUC06_RS04790 (LLUC06_0919) | - | 951626..952300 (-) | 675 | WP_237025698.1 | DUF4145 domain-containing protein | - |
| LLUC06_RS04795 (LLUC06_0920) | - | 952368..952688 (+) | 321 | WP_237025699.1 | helix-turn-helix transcriptional regulator | - |
| LLUC06_RS04800 (LLUC06_0921) | - | 952705..953427 (+) | 723 | WP_081213445.1 | ORF6C domain-containing protein | - |
| LLUC06_RS04805 (LLUC06_0923) | - | 953567..953818 (+) | 252 | WP_058218046.1 | hypothetical protein | - |
| LLUC06_RS04810 (LLUC06_0924) | - | 953906..954070 (+) | 165 | WP_023189551.1 | hypothetical protein | - |
| LLUC06_RS04815 (LLUC06_0925) | - | 954067..954276 (+) | 210 | WP_081213446.1 | hypothetical protein | - |
| LLUC06_RS04820 (LLUC06_0926) | - | 954302..954490 (+) | 189 | WP_081213447.1 | hypothetical protein | - |
| LLUC06_RS04825 (LLUC06_0927) | ssb | 954500..954934 (+) | 435 | WP_081213448.1 | single-stranded DNA-binding protein | Machinery gene |
| LLUC06_RS04830 (LLUC06_0928) | - | 954945..955793 (+) | 849 | WP_081213449.1 | DnaD domain protein | - |
| LLUC06_RS04835 (LLUC06_0929) | - | 955797..956192 (+) | 396 | WP_081213450.1 | hypothetical protein | - |
| LLUC06_RS04840 (LLUC06_0930) | - | 956207..956407 (+) | 201 | WP_128062361.1 | hypothetical protein | - |
| LLUC06_RS04845 (LLUC06_0931) | - | 956404..956913 (+) | 510 | WP_081213451.1 | hypothetical protein | - |
| LLUC06_RS04850 (LLUC06_0932) | - | 957049..957366 (+) | 318 | WP_128062362.1 | hypothetical protein | - |
| LLUC06_RS04855 (LLUC06_0933) | - | 957359..957919 (+) | 561 | WP_081213453.1 | DUF1642 domain-containing protein | - |
| LLUC06_RS04860 (LLUC06_0934) | - | 957916..958260 (+) | 345 | WP_081213454.1 | hypothetical protein | - |
| LLUC06_RS04865 (LLUC06_0935) | - | 958253..958651 (+) | 399 | WP_081213455.1 | hypothetical protein | - |
| LLUC06_RS04870 (LLUC06_0936) | - | 958826..958999 (+) | 174 | WP_158620873.1 | hypothetical protein | - |
| LLUC06_RS04875 (LLUC06_0937) | - | 958999..959160 (+) | 162 | WP_081213456.1 | DUF1660 family phage protein | - |
| LLUC06_RS04880 (LLUC06_0938) | - | 959157..959336 (+) | 180 | WP_128062363.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 144 a.a. Molecular weight: 16390.15 Da Isoelectric Point: 4.7613
>NTDB_id=183066 LLUC06_RS04825 WP_081213448.1 954500..954934(+) (ssb) [Lactococcus lactis subsp. lactis strain UC06]
MINNVVLVGRITRDPELRYTPQQNQAVATFNLAVNRQFKNANGEREADFISCVIWRQQAENLANWAKKETLIGLTGRIQT
RNYENQQGQRVYITEVVADSFQMLESKGGAKQNEESQNNTTPNFARDTPRDIPGTEISDDDLPF
MINNVVLVGRITRDPELRYTPQQNQAVATFNLAVNRQFKNANGEREADFISCVIWRQQAENLANWAKKETLIGLTGRIQT
RNYENQQGQRVYITEVVADSFQMLESKGGAKQNEESQNNTTPNFARDTPRDIPGTEISDDDLPF
Nucleotide
Download Length: 435 bp
>NTDB_id=183066 LLUC06_RS04825 WP_081213448.1 954500..954934(+) (ssb) [Lactococcus lactis subsp. lactis strain UC06]
ATGATAAATAATGTCGTATTAGTGGGTCGTATCACACGAGATCCAGAATTAAGATATACACCACAACAAAATCAAGCAGT
AGCAACTTTCAATTTGGCTGTTAATCGTCAATTTAAGAACGCAAACGGAGAACGTGAAGCAGACTTCATAAGTTGCGTTA
TCTGGCGTCAGCAAGCCGAAAATTTAGCAAATTGGGCTAAAAAAGAAACTTTGATTGGATTAACTGGTAGAATCCAAACG
CGAAACTATGAAAATCAGCAAGGGCAACGAGTTTACATCACAGAAGTAGTTGCTGACAGTTTCCAAATGCTGGAAAGCAA
GGGTGGAGCAAAACAAAATGAAGAGTCACAAAACAATACAACTCCAAATTTTGCGCGTGACACTCCCCGTGATATTCCAG
GTACAGAAATTAGCGATGATGATTTGCCATTTTAG
ATGATAAATAATGTCGTATTAGTGGGTCGTATCACACGAGATCCAGAATTAAGATATACACCACAACAAAATCAAGCAGT
AGCAACTTTCAATTTGGCTGTTAATCGTCAATTTAAGAACGCAAACGGAGAACGTGAAGCAGACTTCATAAGTTGCGTTA
TCTGGCGTCAGCAAGCCGAAAATTTAGCAAATTGGGCTAAAAAAGAAACTTTGATTGGATTAACTGGTAGAATCCAAACG
CGAAACTATGAAAATCAGCAAGGGCAACGAGTTTACATCACAGAAGTAGTTGCTGACAGTTTCCAAATGCTGGAAAGCAA
GGGTGGAGCAAAACAAAATGAAGAGTCACAAAACAATACAACTCCAAATTTTGCGCGTGACACTCCCCGTGATATTCCAG
GTACAGAAATTAGCGATGATGATTTGCCATTTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.386 |
100 |
0.646 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
52 |
100 |
0.632 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
41.667 |
100 |
0.417 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
55.14 |
74.306 |
0.41 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
40.278 |
100 |
0.403 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
39.583 |
100 |
0.396 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
39.583 |
100 |
0.396 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
39.583 |
100 |
0.396 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
39.583 |
100 |
0.396 |
| ssbB/cilA | Streptococcus mitis SK321 |
39.583 |
100 |
0.396 |
| ssb | Neisseria gonorrhoeae MS11 |
31.792 |
100 |
0.382 |
| ssb | Neisseria meningitidis MC58 |
31.214 |
100 |
0.375 |
| ssbA | Streptococcus mutans UA159 |
36.806 |
100 |
0.368 |