Detailed information
Bioinformatically predicted
Overview
| Name | pilE | Type | Machinery gene |
| Locus tag | A9C11_RS33915 | Genome accession | NZ_CP015878 |
| Coordinates | 1149544..1150002 (+) | Length | 152 a.a. |
| NCBI ID | WP_082936679.1 | Uniprot ID | - |
| Organism | Pseudomonas citronellolis strain SJTE-3 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 1144629..1160290 | 1149544..1150002 | within | 0 |
Gene organization within MGE regions
Location: 1144629..1160290
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A9C11_RS05105 (A9C11_05100) | yacG | 1144629..1144838 (-) | 210 | WP_043272268.1 | DNA gyrase inhibitor YacG | - |
| A9C11_RS05110 (A9C11_05105) | coaE | 1144835..1145443 (-) | 609 | WP_064581980.1 | dephospho-CoA kinase | - |
| A9C11_RS05115 (A9C11_05110) | pilD | 1145517..1146389 (-) | 873 | WP_064581983.1 | prepilin peptidase | Machinery gene |
| A9C11_RS05120 (A9C11_05115) | pilC | 1146390..1147607 (-) | 1218 | WP_064581985.1 | type II secretion system F family protein | Machinery gene |
| A9C11_RS05125 (A9C11_05120) | pilB | 1147611..1149314 (-) | 1704 | WP_064581987.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| A9C11_RS33915 | pilE | 1149544..1150002 (+) | 459 | WP_082936679.1 | pilin | Machinery gene |
| A9C11_RS35205 | - | 1150003..1151985 (+) | 1983 | WP_157763223.1 | hypothetical protein | - |
| A9C11_RS33920 | - | 1151969..1152454 (+) | 486 | WP_157763225.1 | GtrA family protein | - |
| A9C11_RS05130 (A9C11_05125) | - | 1152444..1153988 (+) | 1545 | WP_064581990.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| A9C11_RS33925 | galE | 1154165..1155184 (-) | 1020 | WP_082936681.1 | UDP-glucose 4-epimerase GalE | - |
| A9C11_RS05140 (A9C11_05135) | - | 1155628..1156344 (+) | 717 | WP_082936682.1 | glycosyltransferase family 25 protein | - |
| A9C11_RS05145 (A9C11_05140) | - | 1156446..1157525 (+) | 1080 | WP_167543638.1 | diguanylate cyclase | - |
| A9C11_RS35210 | - | 1157522..1157668 (-) | 147 | WP_208858253.1 | hypothetical protein | - |
| A9C11_RS05150 (A9C11_05145) | - | 1157772..1158023 (+) | 252 | WP_064581993.1 | type II toxin-antitoxin system HicA family toxin | - |
| A9C11_RS05155 (A9C11_05150) | - | 1158020..1158361 (+) | 342 | WP_064581994.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| A9C11_RS05160 (A9C11_05155) | - | 1158427..1158654 (+) | 228 | WP_064581996.1 | DUF433 domain-containing protein | - |
| A9C11_RS05165 (A9C11_05160) | - | 1158843..1160039 (-) | 1197 | WP_064581998.1 | type II toxin-antitoxin system HipA family toxin | - |
| A9C11_RS05170 (A9C11_05165) | - | 1160039..1160290 (-) | 252 | WP_043272292.1 | helix-turn-helix transcriptional regulator | - |
Sequence
Protein
Download Length: 152 a.a. Molecular weight: 15233.53 Da Isoelectric Point: 8.1178
>NTDB_id=182720 A9C11_RS33915 WP_082936679.1 1149544..1150002(+) (pilE) [Pseudomonas citronellolis strain SJTE-3]
MKAQKGFTLIELMIVVAIIGILAAIALPAYQDYTARAKVSEIVLAASACRTTITEVVQSSTTLPAANAWGCESSTATSKY
VAKVETSAAGVVSVTAGTGINSDVDGKVLTLIPSSAASGVTAPTAGGTINHWVCGGTGTTIPSKFLPGSCRG
MKAQKGFTLIELMIVVAIIGILAAIALPAYQDYTARAKVSEIVLAASACRTTITEVVQSSTTLPAANAWGCESSTATSKY
VAKVETSAAGVVSVTAGTGINSDVDGKVLTLIPSSAASGVTAPTAGGTINHWVCGGTGTTIPSKFLPGSCRG
Nucleotide
Download Length: 459 bp
>NTDB_id=182720 A9C11_RS33915 WP_082936679.1 1149544..1150002(+) (pilE) [Pseudomonas citronellolis strain SJTE-3]
ATGAAGGCTCAAAAAGGCTTCACCCTGATCGAGTTGATGATTGTCGTAGCGATCATCGGAATTCTTGCAGCAATTGCATT
GCCCGCATATCAAGACTATACAGCTCGCGCTAAGGTTTCCGAGATAGTGCTTGCTGCCTCGGCCTGCCGAACTACCATTA
CTGAAGTAGTTCAGTCCTCTACGACATTGCCAGCAGCCAATGCATGGGGGTGTGAAAGTTCAACGGCAACTTCTAAGTAT
GTTGCAAAAGTGGAAACAAGTGCGGCCGGCGTAGTAAGTGTCACTGCAGGTACTGGAATTAATAGCGATGTTGATGGAAA
GGTTCTTACCCTGATTCCGTCCTCTGCGGCAAGCGGTGTTACTGCTCCAACTGCAGGTGGTACTATTAATCACTGGGTTT
GTGGTGGTACTGGTACAACTATTCCTTCCAAGTTCCTTCCTGGATCTTGCCGTGGTTAA
ATGAAGGCTCAAAAAGGCTTCACCCTGATCGAGTTGATGATTGTCGTAGCGATCATCGGAATTCTTGCAGCAATTGCATT
GCCCGCATATCAAGACTATACAGCTCGCGCTAAGGTTTCCGAGATAGTGCTTGCTGCCTCGGCCTGCCGAACTACCATTA
CTGAAGTAGTTCAGTCCTCTACGACATTGCCAGCAGCCAATGCATGGGGGTGTGAAAGTTCAACGGCAACTTCTAAGTAT
GTTGCAAAAGTGGAAACAAGTGCGGCCGGCGTAGTAAGTGTCACTGCAGGTACTGGAATTAATAGCGATGTTGATGGAAA
GGTTCTTACCCTGATTCCGTCCTCTGCGGCAAGCGGTGTTACTGCTCCAACTGCAGGTGGTACTATTAATCACTGGGTTT
GTGGTGGTACTGGTACAACTATTCCTTCCAAGTTCCTTCCTGGATCTTGCCGTGGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
39.474 |
100 |
0.493 |
| pilE | Neisseria gonorrhoeae strain FA1090 |
41.463 |
100 |
0.447 |
| pilA/pilA1 | Eikenella corrodens VA1 |
42.675 |
100 |
0.441 |
| comP | Acinetobacter baylyi ADP1 |
42.581 |
100 |
0.434 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
42.308 |
100 |
0.434 |
| pilE | Neisseria gonorrhoeae MS11 |
39.394 |
100 |
0.428 |
| pilA2 | Legionella pneumophila str. Paris |
41.892 |
97.368 |
0.408 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
36.527 |
100 |
0.401 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
41.216 |
97.368 |
0.401 |
| pilA | Haemophilus influenzae Rd KW20 |
38.356 |
96.053 |
0.368 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
36.184 |
100 |
0.362 |
| pilA | Acinetobacter baumannii strain A118 |
35.714 |
100 |
0.362 |