Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   A9C11_RS05120 Genome accession   NZ_CP015878
Coordinates   1146390..1147607 (-) Length   405 a.a.
NCBI ID   WP_064581985.1    Uniprot ID   A0A1A9K7F4
Organism   Pseudomonas citronellolis strain SJTE-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1144629..1160290 1146390..1147607 within 0


Gene organization within MGE regions


Location: 1144629..1160290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9C11_RS05105 (A9C11_05100) yacG 1144629..1144838 (-) 210 WP_043272268.1 DNA gyrase inhibitor YacG -
  A9C11_RS05110 (A9C11_05105) coaE 1144835..1145443 (-) 609 WP_064581980.1 dephospho-CoA kinase -
  A9C11_RS05115 (A9C11_05110) pilD 1145517..1146389 (-) 873 WP_064581983.1 prepilin peptidase Machinery gene
  A9C11_RS05120 (A9C11_05115) pilC 1146390..1147607 (-) 1218 WP_064581985.1 type II secretion system F family protein Machinery gene
  A9C11_RS05125 (A9C11_05120) pilB 1147611..1149314 (-) 1704 WP_064581987.1 type IV-A pilus assembly ATPase PilB Machinery gene
  A9C11_RS33915 pilE 1149544..1150002 (+) 459 WP_082936679.1 pilin Machinery gene
  A9C11_RS35205 - 1150003..1151985 (+) 1983 WP_157763223.1 hypothetical protein -
  A9C11_RS33920 - 1151969..1152454 (+) 486 WP_157763225.1 GtrA family protein -
  A9C11_RS05130 (A9C11_05125) - 1152444..1153988 (+) 1545 WP_064581990.1 NAD(P)/FAD-dependent oxidoreductase -
  A9C11_RS33925 galE 1154165..1155184 (-) 1020 WP_082936681.1 UDP-glucose 4-epimerase GalE -
  A9C11_RS05140 (A9C11_05135) - 1155628..1156344 (+) 717 WP_082936682.1 glycosyltransferase family 25 protein -
  A9C11_RS05145 (A9C11_05140) - 1156446..1157525 (+) 1080 WP_167543638.1 diguanylate cyclase -
  A9C11_RS35210 - 1157522..1157668 (-) 147 WP_208858253.1 hypothetical protein -
  A9C11_RS05150 (A9C11_05145) - 1157772..1158023 (+) 252 WP_064581993.1 type II toxin-antitoxin system HicA family toxin -
  A9C11_RS05155 (A9C11_05150) - 1158020..1158361 (+) 342 WP_064581994.1 type II toxin-antitoxin system HicB family antitoxin -
  A9C11_RS05160 (A9C11_05155) - 1158427..1158654 (+) 228 WP_064581996.1 DUF433 domain-containing protein -
  A9C11_RS05165 (A9C11_05160) - 1158843..1160039 (-) 1197 WP_064581998.1 type II toxin-antitoxin system HipA family toxin -
  A9C11_RS05170 (A9C11_05165) - 1160039..1160290 (-) 252 WP_043272292.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44100.77 Da        Isoelectric Point: 9.9133

>NTDB_id=182697 A9C11_RS05120 WP_064581985.1 1146390..1147607(-) (pilC) [Pseudomonas citronellolis strain SJTE-3]
MAEKALKTSVFLFEGTDRKGGKVKGELPGTNTALVKAQLRKQGINPTKVRKKGISLLGKGKRIKPMDIALFTRQMATMMG
SGVPLLQSFDIIAEGFDNPNMRKLVEDIKQEVAAGNSLANSLRRKPQYFDDLYCNLVDAGEQSGALETLLDRVATYKEKT
ESLKAKIKKAMTYPIAVIIVAIIVSAILLIKVVPQFQSVFANFGAELPAFTKMVIGLSEVLQEWWFIVLIGLFALAFSLR
EAHRRSEKFRDSADRAILKLPIIGGIIYKSAVARYARTLSTTFAAGVPLVEALDSVSGATGNVVFRNAVTKIKQDVSSGT
QLNFSMRTTGVFPTMAVQMAAIGEESGSLDSMLDKVASYYEEEVDNAVDNLTTLMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGNVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=182697 A9C11_RS05120 WP_064581985.1 1146390..1147607(-) (pilC) [Pseudomonas citronellolis strain SJTE-3]
ATGGCGGAAAAAGCATTGAAAACCAGTGTCTTCCTTTTTGAAGGCACAGATAGAAAAGGCGGAAAGGTAAAAGGAGAGTT
GCCAGGAACCAATACGGCACTGGTCAAAGCACAACTGCGTAAGCAGGGCATCAACCCGACCAAAGTGCGCAAGAAGGGAA
TTTCGTTACTGGGCAAGGGCAAGCGAATCAAGCCCATGGACATTGCCCTGTTTACCCGGCAAATGGCGACCATGATGGGC
TCAGGCGTACCCCTGCTGCAATCCTTCGACATCATCGCCGAAGGTTTTGACAACCCTAACATGAGAAAGTTGGTCGAAGA
CATCAAGCAGGAAGTCGCTGCCGGCAATAGCCTAGCCAACTCGTTACGCAGGAAACCCCAATATTTCGACGATCTCTACT
GCAACCTTGTCGATGCCGGCGAACAGTCCGGCGCACTGGAAACACTGTTGGATCGCGTGGCTACGTATAAGGAAAAGACC
GAGTCACTGAAAGCCAAGATCAAGAAGGCGATGACCTATCCAATCGCGGTAATCATCGTTGCAATTATCGTCTCTGCAAT
CCTTCTCATTAAAGTGGTCCCCCAGTTCCAGTCCGTTTTCGCTAACTTTGGTGCCGAACTTCCAGCTTTCACGAAGATGG
TTATCGGCCTGTCCGAGGTGCTACAGGAGTGGTGGTTTATCGTTCTGATCGGCCTGTTCGCTTTGGCATTTTCGCTCCGC
GAAGCGCATCGCCGATCGGAAAAGTTCCGCGACTCAGCAGACAGGGCAATCCTAAAACTCCCCATCATTGGCGGCATCAT
CTACAAGTCCGCAGTTGCACGCTATGCACGCACACTGTCCACGACCTTCGCGGCAGGCGTTCCTTTGGTTGAAGCACTGG
ATTCTGTCTCCGGTGCTACCGGCAATGTGGTATTCCGCAACGCAGTGACCAAGATCAAGCAAGATGTATCCTCGGGCACC
CAGCTCAACTTCTCCATGCGCACCACCGGTGTCTTTCCCACCATGGCCGTACAAATGGCGGCCATTGGCGAGGAGTCCGG
ATCTCTGGACTCCATGTTGGACAAGGTCGCCAGCTACTACGAAGAGGAAGTGGACAACGCTGTCGACAACCTCACCACCC
TGATGGAACCCATGATCATGGCCGTACTTGGTGTACTAGTCGGCGGCCTGATCATCGCCATGTACCTCCCCATCTTCCAA
CTCGGCAACGTCGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1A9K7F4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

79.012

100

0.79
  pilC Acinetobacter baumannii D1279779

60.247

100

0.602
  pilC Acinetobacter baylyi ADP1

59.113

100

0.593
  pilC Legionella pneumophila strain ERS1305867

54.04

97.778

0.528
  pilG Neisseria meningitidis 44/76-A

44.527

99.259

0.442
  pilG Neisseria gonorrhoeae MS11

44.279

99.259

0.44
  pilC Vibrio cholerae strain A1552

40.988

100

0.41
  pilC Vibrio campbellii strain DS40M4

40.909

97.778

0.4
  pilC Thermus thermophilus HB27

37.406

99.012

0.37

Multiple sequence alignment