Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   B1761_RS06495 Genome accession   NZ_CP019935
Coordinates   1196724..1197221 (+) Length   165 a.a.
NCBI ID   WP_002949220.1    Uniprot ID   Q5M6C4
Organism   Streptococcus thermophilus strain APC151     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1191724..1202221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1761_RS06460 (B1761_06545) - 1191724..1192538 (-) 815 Protein_1179 ISL3 family transposase -
  B1761_RS06465 (B1761_06550) - 1192831..1193052 (+) 222 WP_002948904.1 DUF4649 family protein -
  B1761_RS10105 - 1193137..1193459 (-) 323 Protein_1181 transposase -
  B1761_RS06475 (B1761_06560) - 1193651..1193974 (+) 324 WP_002949215.1 M20/M25/M40 family metallo-hydrolase -
  B1761_RS06480 (B1761_06565) - 1194056..1195246 (+) 1191 WP_011680651.1 SAM-dependent methyltransferase -
  B1761_RS06485 (B1761_06570) - 1195506..1195970 (-) 465 Protein_1184 transposase family protein -
  B1761_RS06490 (B1761_06575) - 1196328..1196432 (+) 105 Protein_1185 IS200/IS605 family transposase -
  B1761_RS06495 (B1761_06580) comX 1196724..1197221 (+) 498 WP_002949220.1 sigma factor Regulator
  B1761_RS06500 (B1761_06585) - 1197321..1198163 (-) 843 WP_024704159.1 mechanosensitive ion channel family protein -
  B1761_RS06505 (B1761_06590) tig 1198304..1199587 (+) 1284 WP_014607878.1 trigger factor -
  B1761_RS06510 (B1761_06595) rpoE 1199745..1200320 (+) 576 WP_002949228.1 DNA-directed RNA polymerase subunit delta -
  B1761_RS06515 (B1761_06600) - 1200571..1202175 (+) 1605 WP_002949230.1 CTP synthase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 20160.12 Da        Isoelectric Point: 5.2073

>NTDB_id=182268 B1761_RS06495 WP_002949220.1 1196724..1197221(+) (comX) [Streptococcus thermophilus strain APC151]
MEQEVFVKAYEKVRPIVLKAFRQYFIQLWDQADMEQEAMMTLYQLLKKFPDLEKDDDKLRRYFKTKFRNRLNDEVRRQES
VKRQANRQCYVEISDIAFCIPNKELDMVDRLAYDEQLNAFREQLSSEDSLKLDRLLGGECFRGRKKMIRELRFWMVDFDP
CNEED

Nucleotide


Download         Length: 498 bp        

>NTDB_id=182268 B1761_RS06495 WP_002949220.1 1196724..1197221(+) (comX) [Streptococcus thermophilus strain APC151]
ATGGAACAAGAAGTTTTTGTTAAGGCATATGAAAAGGTAAGGCCAATTGTACTTAAGGCGTTTAGGCAATACTTTATTCA
GCTTTGGGATCAAGCTGACATGGAGCAAGAGGCGATGATGACTTTGTATCAGCTTTTAAAAAAGTTTCCTGATTTAGAGA
AAGATGATGATAAGTTACGTCGTTACTTTAAAACTAAGTTTAGGAATCGACTTAATGATGAAGTGAGGCGGCAGGAGTCA
GTAAAACGTCAAGCTAATAGACAGTGTTATGTTGAAATTTCAGATATTGCCTTTTGTATTCCCAATAAGGAGCTAGATAT
GGTTGATAGACTTGCTTATGATGAACAGCTTAATGCTTTTCGTGAGCAGTTATCATCGGAAGATTCTCTTAAGTTGGATC
GATTGTTGGGTGGTGAATGCTTTAGGGGAAGGAAAAAGATGATACGAGAGTTAAGATTTTGGATGGTTGACTTTGATCCA
TGTAATGAAGAAGACTGA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(10-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M6C4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.