Detailed information
Bioinformatically predicted
Overview
| Name | comYC | Type | Machinery gene |
| Locus tag | NX99_RS07580 | Genome accession | NZ_CP015282 |
| Coordinates | 1656142..1656456 (+) | Length | 104 a.a. |
| NCBI ID | WP_037611125.1 | Uniprot ID | - |
| Organism | Streptococcus salivarius strain ATCC 27945 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1651142..1661456
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NX99_RS07565 (NX99_07425) | - | 1653768..1654130 (+) | 363 | WP_002887019.1 | DUF1033 family protein | - |
| NX99_RS07570 (NX99_07430) | comGA/cglA/cilD | 1654210..1655151 (+) | 942 | WP_002887018.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| NX99_RS07575 (NX99_07435) | comYB | 1655033..1656133 (+) | 1101 | WP_148263031.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| NX99_RS07580 (NX99_07440) | comYC | 1656142..1656456 (+) | 315 | WP_037611125.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| NX99_RS07585 (NX99_07445) | comYD | 1656416..1656844 (+) | 429 | WP_253183813.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| NX99_RS07590 (NX99_07450) | comGE | 1656876..1657106 (+) | 231 | WP_021144685.1 | competence type IV pilus minor pilin ComGE | - |
| NX99_RS07595 (NX99_07455) | comYF | 1657093..1657530 (+) | 438 | WP_021144684.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| NX99_RS07600 (NX99_07460) | comGG | 1657508..1657825 (+) | 318 | WP_021144683.1 | competence type IV pilus minor pilin ComGG | - |
| NX99_RS07605 (NX99_07465) | comYH | 1657870..1658826 (+) | 957 | WP_002885753.1 | class I SAM-dependent methyltransferase | Machinery gene |
| NX99_RS07610 (NX99_07470) | - | 1658883..1660076 (+) | 1194 | WP_002885831.1 | acetate kinase | - |
| NX99_RS07615 (NX99_07475) | - | 1660327..1660524 (+) | 198 | WP_002885716.1 | helix-turn-helix transcriptional regulator | - |
| NX99_RS07620 (NX99_07480) | - | 1660536..1661192 (+) | 657 | WP_084915247.1 | CPBP family intramembrane glutamic endopeptidase | - |
Sequence
Protein
Download Length: 104 a.a. Molecular weight: 11428.31 Da Isoelectric Point: 9.7150
>NTDB_id=178235 NX99_RS07580 WP_037611125.1 1656142..1656456(+) (comYC) [Streptococcus salivarius strain ATCC 27945]
MKKLNAVKLRAFTLIEMLVVLLIISILLLLFVPNLSKQKDSVKETGNAAVVKVVDSQAELYEMKNNKTASLAALVSEGQI
TQKQADSYNDYYAKHGGESRSVAN
MKKLNAVKLRAFTLIEMLVVLLIISILLLLFVPNLSKQKDSVKETGNAAVVKVVDSQAELYEMKNNKTASLAALVSEGQI
TQKQADSYNDYYAKHGGESRSVAN
Nucleotide
Download Length: 315 bp
>NTDB_id=178235 NX99_RS07580 WP_037611125.1 1656142..1656456(+) (comYC) [Streptococcus salivarius strain ATCC 27945]
TTGAAAAAATTGAATGCCGTTAAATTACGTGCTTTTACGCTGATTGAAATGCTGGTCGTGCTTCTCATTATCAGTATTCT
CCTTTTGCTCTTTGTACCTAACTTGAGCAAGCAGAAGGATTCTGTTAAAGAGACTGGAAATGCGGCTGTGGTCAAGGTCG
TGGATTCTCAAGCAGAACTTTATGAAATGAAGAATAACAAGACAGCTAGCTTAGCCGCTCTTGTTTCAGAAGGTCAAATC
ACGCAAAAACAGGCAGATTCATACAATGATTACTATGCGAAACATGGTGGCGAAAGCCGCTCAGTGGCCAATTAG
TTGAAAAAATTGAATGCCGTTAAATTACGTGCTTTTACGCTGATTGAAATGCTGGTCGTGCTTCTCATTATCAGTATTCT
CCTTTTGCTCTTTGTACCTAACTTGAGCAAGCAGAAGGATTCTGTTAAAGAGACTGGAAATGCGGCTGTGGTCAAGGTCG
TGGATTCTCAAGCAGAACTTTATGAAATGAAGAATAACAAGACAGCTAGCTTAGCCGCTCTTGTTTCAGAAGGTCAAATC
ACGCAAAAACAGGCAGATTCATACAATGATTACTATGCGAAACATGGTGGCGAAAGCCGCTCAGTGGCCAATTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYC | Streptococcus mutans UA140 |
70.192 |
100 |
0.702 |
| comYC | Streptococcus mutans UA159 |
70.192 |
100 |
0.702 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
64.762 |
100 |
0.654 |
| comGC/cglC | Streptococcus mitis SK321 |
63.636 |
95.192 |
0.606 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
59.406 |
97.115 |
0.577 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
58.416 |
97.115 |
0.567 |
| comGC/cglC | Streptococcus pneumoniae R6 |
59.596 |
95.192 |
0.567 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
59.596 |
95.192 |
0.567 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
59.596 |
95.192 |
0.567 |
| comGC/cglC | Streptococcus pneumoniae D39 |
59.596 |
95.192 |
0.567 |
| comYC | Streptococcus suis isolate S10 |
61.364 |
84.615 |
0.519 |
| comGC | Staphylococcus aureus MW2 |
50 |
75 |
0.375 |
| comGC | Staphylococcus aureus N315 |
50 |
75 |
0.375 |