Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   A2G56_RS06510 Genome accession   NZ_CP014835
Coordinates   1447625..1447858 (-) Length   77 a.a.
NCBI ID   WP_237334442.1    Uniprot ID   -
Organism   Streptococcus halotolerans strain HTS9     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1442625..1452858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A2G56_RS06465 - 1442844..1443296 (-) 453 WP_062710604.1 hypothetical protein -
  A2G56_RS06470 - 1443309..1443506 (-) 198 WP_062710607.1 helix-turn-helix transcriptional regulator -
  A2G56_RS10770 - 1443544..1443732 (-) 189 WP_172793790.1 hypothetical protein -
  A2G56_RS06480 - 1443904..1445094 (-) 1191 WP_062710613.1 acetate kinase -
  A2G56_RS06485 comYH 1445155..1446108 (-) 954 WP_062710617.1 class I SAM-dependent methyltransferase Machinery gene
  A2G56_RS06490 comGG 1446151..1446558 (-) 408 WP_172793791.1 competence type IV pilus minor pilin ComGG -
  A2G56_RS06495 comYF 1446542..1446979 (-) 438 WP_062710624.1 competence type IV pilus minor pilin ComGF Machinery gene
  A2G56_RS06500 comGE 1446957..1447256 (-) 300 WP_062710628.1 competence type IV pilus minor pilin ComGE -
  A2G56_RS06505 comGD 1447228..1447650 (-) 423 WP_335339155.1 competence type IV pilus minor pilin ComGD -
  A2G56_RS06510 comYC 1447625..1447858 (-) 234 WP_237334442.1 competence type IV pilus major pilin ComGC Machinery gene
  A2G56_RS06515 comYB 1447919..1448977 (-) 1059 WP_082785120.1 competence type IV pilus assembly protein ComGB Machinery gene
  A2G56_RS06520 comYA 1448871..1449824 (-) 954 WP_062710638.1 competence type IV pilus ATPase ComGA Machinery gene
  A2G56_RS06525 - 1450032..1450412 (-) 381 WP_062710641.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 77 a.a.        Molecular weight: 8536.15 Da        Isoelectric Point: 6.2653

>NTDB_id=174486 A2G56_RS06510 WP_237334442.1 1447625..1447858(-) (comYC) [Streptococcus halotolerans strain HTS9]
MLLVLLIISVLMLLFVPNLSKQKAAVDEKGKAAVVKVVESQMELYEMNEDVKPSIQQLVGEGYITQKQADAYAKTKP

Nucleotide


Download         Length: 234 bp        

>NTDB_id=174486 A2G56_RS06510 WP_237334442.1 1447625..1447858(-) (comYC) [Streptococcus halotolerans strain HTS9]
ATGTTACTGGTTTTACTTATCATCAGTGTGCTCATGCTTTTATTTGTGCCTAATTTAAGTAAACAAAAGGCGGCTGTTGA
TGAAAAAGGAAAGGCGGCTGTCGTTAAGGTTGTGGAGAGTCAGATGGAATTGTATGAAATGAACGAAGATGTTAAACCAT
CCATTCAACAATTAGTGGGCGAGGGTTATATCACTCAAAAACAAGCAGATGCTTATGCTAAAACTAAACCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus gordonii str. Challis substr. CH1

67.123

94.805

0.636
  comYC Streptococcus suis isolate S10

63.158

98.701

0.623
  comGC/cglC Streptococcus pneumoniae D39

65.278

93.506

0.61
  comGC/cglC Streptococcus pneumoniae TIGR4

65.278

93.506

0.61
  comGC/cglC Streptococcus pneumoniae R6

65.278

93.506

0.61
  comGC/cglC Streptococcus pneumoniae Rx1

65.278

93.506

0.61
  comGC Lactococcus lactis subsp. cremoris KW2

60

77.922

0.468
  comGC/cglC Streptococcus mitis NCTC 12261

60.345

75.325

0.455
  comGC/cglC Streptococcus mitis SK321

60.345

75.325

0.455
  comGC Staphylococcus aureus MW2

46.377

89.61

0.416
  comGC Staphylococcus aureus N315

46.377

89.61

0.416
  comYC Streptococcus mutans UA140

55.357

72.727

0.403
  comYC Streptococcus mutans UA159

55.357

72.727

0.403

Multiple sequence alignment