Detailed information NTG0174485

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: A2G56_RS06495
• Genome accession: NZ_CP014835
• Coordinates: 1446542..1446979 (-)
• Length: 145 a.a.
• NCBI ID: WP_062710624.1
• Uniprot ID: -
• Organism: Streptococcus halotolerans strain HTS9
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1441542..1451979

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A2G56_RS06460	-	1442139..1442810 (-)	672	WP_062710601.1	CPBP family intramembrane glutamic endopeptidase	-
A2G56_RS06465	-	1442844..1443296 (-)	453	WP_062710604.1	hypothetical protein	-
A2G56_RS06470	-	1443309..1443506 (-)	198	WP_062710607.1	helix-turn-helix transcriptional regulator	-
A2G56_RS10770	-	1443544..1443732 (-)	189	WP_172793790.1	hypothetical protein	-
A2G56_RS06480	-	1443904..1445094 (-)	1191	WP_062710613.1	acetate kinase	-
A2G56_RS06485	comYH	1445155..1446108 (-)	954	WP_062710617.1	class I SAM-dependent methyltransferase	Machinery gene
A2G56_RS06490	comGG	1446151..1446558 (-)	408	WP_172793791.1	competence type IV pilus minor pilin ComGG	-
A2G56_RS06495	comYF	1446542..1446979 (-)	438	WP_062710624.1	competence type IV pilus minor pilin ComGF	Machinery gene
A2G56_RS06500	comGE	1446957..1447256 (-)	300	WP_062710628.1	competence type IV pilus minor pilin ComGE	-
A2G56_RS06505	comGD	1447228..1447650 (-)	423	WP_335339155.1	competence type IV pilus minor pilin ComGD	-
A2G56_RS06510	comYC	1447625..1447858 (-)	234	WP_237334442.1	competence type IV pilus major pilin ComGC	Machinery gene
A2G56_RS06515	comYB	1447919..1448977 (-)	1059	WP_082785120.1	competence type IV pilus assembly protein ComGB	Machinery gene
A2G56_RS06520	comYA	1448871..1449824 (-)	954	WP_062710638.1	competence type IV pilus ATPase ComGA	Machinery gene
A2G56_RS06525	-	1450032..1450412 (-)	381	WP_062710641.1	DUF1033 family protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16703.48 Da
• Isoelectric Point: 10.4341

>NTDB_id=174485 A2G56_RS06495 WP_062710624.1 1446542..1446979(-) (comYF) [Streptococcus halotolerans strain HTS9]
MLKSYRLKAFTLVECLLALVVLSGSIQVYQAMTKVVSAHIHEIKQPRDKDWLLFCQQFRSELANSRLVKVSDNRLIVLKN
TQTLVFGKSKKDDFRKTGSDGRGFQPMIYKVKSAHFTQFGQTISVQMTFEDGRVREFLYAFEKAS

Nucleotide

• Length: 438 bp

>NTDB_id=174485 A2G56_RS06495 WP_062710624.1 1446542..1446979(-) (comYF) [Streptococcus halotolerans strain HTS9]
GTGTTAAAAAGCTATCGCCTTAAGGCCTTTACTTTAGTAGAATGTTTACTTGCCCTTGTGGTGTTGTCGGGATCGATTCA
AGTATATCAAGCTATGACTAAGGTCGTTTCAGCTCATATTCATGAGATCAAGCAGCCTAGGGATAAGGATTGGCTACTCT
TTTGCCAGCAATTTCGTTCAGAGTTAGCGAATTCTCGGTTGGTCAAGGTGTCTGACAATAGACTAATTGTCTTAAAAAAT
ACCCAAACATTGGTTTTTGGAAAATCGAAAAAAGATGATTTTAGAAAAACAGGTAGCGATGGTCGAGGATTTCAACCCAT
GATCTACAAGGTGAAGTCCGCTCATTTTACCCAATTTGGCCAGACCATAAGTGTCCAAATGACTTTTGAAGATGGAAGGG
TGCGTGAATTTCTTTATGCTTTTGAAAAAGCATCTTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (37-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	55.944	98.621	0.552
comYF	Streptococcus mutans UA159	55.245	98.621	0.545
comGF/cglF	Streptococcus pneumoniae Rx1	43.972	97.241	0.428
comGF/cglF	Streptococcus pneumoniae D39	43.972	97.241	0.428
comGF/cglF	Streptococcus pneumoniae R6	43.972	97.241	0.428
comGF/cglF	Streptococcus pneumoniae TIGR4	43.972	97.241	0.428
comGF/cglF	Streptococcus mitis NCTC 12261	43.662	97.931	0.428
comGF/cglF	Streptococcus mitis SK321	42.958	97.931	0.421
comGF	Lactococcus lactis subsp. cremoris KW2	38.971	93.793	0.366