Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   A2G56_RS06515 Genome accession   NZ_CP014835
Coordinates   1447919..1448977 (-) Length   352 a.a.
NCBI ID   WP_082785120.1    Uniprot ID   -
Organism   Streptococcus halotolerans strain HTS9     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1442919..1453977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A2G56_RS06470 - 1443309..1443506 (-) 198 WP_062710607.1 helix-turn-helix transcriptional regulator -
  A2G56_RS10770 - 1443544..1443732 (-) 189 WP_172793790.1 hypothetical protein -
  A2G56_RS06480 - 1443904..1445094 (-) 1191 WP_062710613.1 acetate kinase -
  A2G56_RS06485 comYH 1445155..1446108 (-) 954 WP_062710617.1 class I SAM-dependent methyltransferase Machinery gene
  A2G56_RS06490 comGG 1446151..1446558 (-) 408 WP_172793791.1 competence type IV pilus minor pilin ComGG -
  A2G56_RS06495 comYF 1446542..1446979 (-) 438 WP_062710624.1 competence type IV pilus minor pilin ComGF Machinery gene
  A2G56_RS06500 comGE 1446957..1447256 (-) 300 WP_062710628.1 competence type IV pilus minor pilin ComGE -
  A2G56_RS06505 comGD 1447228..1447650 (-) 423 WP_335339155.1 competence type IV pilus minor pilin ComGD -
  A2G56_RS06510 comYC 1447625..1447858 (-) 234 WP_237334442.1 competence type IV pilus major pilin ComGC Machinery gene
  A2G56_RS06515 comYB 1447919..1448977 (-) 1059 WP_082785120.1 competence type IV pilus assembly protein ComGB Machinery gene
  A2G56_RS06520 comYA 1448871..1449824 (-) 954 WP_062710638.1 competence type IV pilus ATPase ComGA Machinery gene
  A2G56_RS06525 - 1450032..1450412 (-) 381 WP_062710641.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 40027.44 Da        Isoelectric Point: 9.2132

>NTDB_id=174487 A2G56_RS06515 WP_082785120.1 1447919..1448977(-) (comYB) [Streptococcus halotolerans strain HTS9]
MFLANGTSSWLSFLNQDISLKNKSKSRVLTTQKQVKIIQLFNNLLSSGFNLPETVDFLKRSQLVPDHQIQIMHETLLNGF
GLPILMKNLGFSEAVVTQLSLAETHGNTQKSMAKIESYLRQVGLIKKKLIEVATYPIILLLFLVLIMLGLKNYLLPQIEE
GNAATALLEHSPTVFLAGMVTLFCLSLLAIYLSKKTEPIKLYRFLSGLPFIGYTIKLYLTAYYAREWGNLLGQGVEMTSI
VSLMQKQESRLFSSIGRDMQAALLSGQSFHKKVLDYPFFLKEFSLIIEYGDAKGHLGQELDVFSEELWEQFFYRLNKAMQ
LIQPVIFILVAFMIVMIYAAMLLPMYQSMEVM

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=174487 A2G56_RS06515 WP_082785120.1 1447919..1448977(-) (comYB) [Streptococcus halotolerans strain HTS9]
ATGTTTCTAGCCAATGGAACCAGCAGTTGGTTGAGCTTTTTAAATCAGGACATCTCTCTGAAGAACAAATCCAAATCGAG
AGTATTAACTACCCAAAAGCAGGTTAAAATCATTCAACTTTTTAACAATCTCTTGAGTTCTGGCTTCAATCTGCCTGAAA
CAGTTGATTTTTTGAAGCGTAGTCAATTGGTACCAGATCACCAAATTCAGATTATGCACGAAACCTTGCTAAATGGATTT
GGCTTACCGATTCTGATGAAAAATCTGGGATTCTCAGAGGCGGTTGTTACCCAGCTATCTTTAGCAGAGACCCATGGTAA
CACCCAAAAAAGTATGGCCAAAATTGAAAGCTATCTGAGACAGGTGGGTTTGATTAAGAAAAAACTAATCGAAGTGGCCA
CCTATCCGATTATTTTACTGCTGTTTTTGGTTCTAATCATGCTTGGCCTTAAAAATTATCTTTTGCCCCAGATAGAAGAA
GGCAATGCAGCGACGGCTCTTTTAGAACATTCTCCTACTGTCTTTTTAGCAGGAATGGTGACGCTGTTTTGTCTTAGTTT
ATTGGCCATTTATCTTAGTAAGAAAACGGAACCCATTAAACTCTATCGTTTTTTGAGTGGTCTTCCTTTTATTGGTTATA
CCATCAAACTTTATCTGACAGCTTATTATGCGCGTGAATGGGGAAATCTTTTGGGTCAGGGAGTTGAGATGACCAGCATT
GTGTCGCTGATGCAGAAACAGGAATCACGACTGTTTTCAAGTATAGGTCGTGATATGCAGGCTGCTTTGTTGTCTGGTCA
ATCTTTTCACAAGAAGGTTTTGGACTATCCTTTTTTCTTGAAAGAATTCAGCTTGATTATTGAATATGGCGATGCCAAAG
GACACCTCGGTCAGGAGTTAGATGTTTTCTCAGAAGAACTTTGGGAGCAATTTTTCTATCGTTTGAATAAGGCCATGCAG
TTGATTCAACCTGTTATTTTTATCTTGGTTGCGTTTATGATTGTCATGATTTACGCAGCTATGCTATTACCAATGTATCA
GTCTATGGAGGTTATGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(224-344)

Type II secretion system (T2SS), protein F (T2SSF)

(38-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

60.997

96.875

0.591
  comYB Streptococcus mutans UA159

60.997

96.875

0.591
  comYB Streptococcus gordonii str. Challis substr. CH1

55.848

97.159

0.543
  comGB/cglB Streptococcus mitis NCTC 12261

52.679

95.455

0.503
  comGB/cglB Streptococcus pneumoniae TIGR4

51.045

95.17

0.486
  comGB/cglB Streptococcus pneumoniae Rx1

51.045

95.17

0.486
  comGB/cglB Streptococcus mitis SK321

51.045

95.17

0.486
  comGB/cglB Streptococcus pneumoniae D39

51.045

95.17

0.486
  comGB/cglB Streptococcus pneumoniae R6

51.045

95.17

0.486
  comGB Lactococcus lactis subsp. cremoris KW2

48.476

93.182

0.452

Multiple sequence alignment