Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | AL537_RS01430 | Genome accession | NZ_CP014036 |
| Coordinates | 310522..310914 (+) | Length | 130 a.a. |
| NCBI ID | WP_104970939.1 | Uniprot ID | - |
| Organism | Vibrio diabolicus strain FDAARGOS_105 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 305522..315914
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AL537_RS01415 (AL537_01415) | pdhR | 307556..308323 (-) | 768 | WP_005396680.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| AL537_RS01420 (AL537_01420) | ampD | 308729..309280 (-) | 552 | WP_104970938.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| AL537_RS01425 (AL537_01425) | nadC | 309373..310260 (+) | 888 | WP_053809204.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| AL537_RS01430 (AL537_01430) | pilA | 310522..310914 (+) | 393 | WP_104970939.1 | pilin | Machinery gene |
| AL537_RS01435 (AL537_01435) | pilB | 310915..312600 (+) | 1686 | WP_104970940.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| AL537_RS01440 (AL537_01440) | pilC | 312624..313847 (+) | 1224 | WP_005396687.1 | type II secretion system F family protein | Machinery gene |
| AL537_RS01445 (AL537_01445) | pilD | 313912..314781 (+) | 870 | WP_012841418.1 | A24 family peptidase | Machinery gene |
| AL537_RS01450 (AL537_01450) | coaE | 314782..315396 (+) | 615 | WP_047008979.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 130 a.a. Molecular weight: 13395.49 Da Isoelectric Point: 9.0661
>NTDB_id=167720 AL537_RS01430 WP_104970939.1 310522..310914(+) (pilA) [Vibrio diabolicus strain FDAARGOS_105]
MKNSKQKKQQGFTLIELMIVVAVIGVLAAIAIPQYQNYVKKSALGTALASASAYKIIVEDEIASTGSFPAISEAFGIGTI
NATSGAVSTNEIVASITEGAGKGQKVKLVRDSNGWECKLVSAAVSITGCS
MKNSKQKKQQGFTLIELMIVVAVIGVLAAIAIPQYQNYVKKSALGTALASASAYKIIVEDEIASTGSFPAISEAFGIGTI
NATSGAVSTNEIVASITEGAGKGQKVKLVRDSNGWECKLVSAAVSITGCS
Nucleotide
Download Length: 393 bp
>NTDB_id=167720 AL537_RS01430 WP_104970939.1 310522..310914(+) (pilA) [Vibrio diabolicus strain FDAARGOS_105]
ATGAAAAACAGTAAACAAAAAAAACAACAGGGTTTTACTCTGATCGAATTGATGATTGTGGTGGCGGTAATTGGTGTTTT
AGCTGCAATTGCGATCCCTCAATACCAAAATTATGTAAAGAAAAGTGCTTTGGGTACCGCATTAGCATCAGCAAGTGCTT
ACAAAATCATAGTTGAAGATGAGATTGCATCTACTGGTTCTTTCCCTGCAATTTCAGAAGCCTTCGGTATAGGAACAATC
AATGCGACCTCTGGTGCAGTTAGTACCAACGAAATAGTTGCGAGTATTACTGAAGGCGCAGGCAAAGGCCAAAAAGTAAA
ACTAGTACGAGATAGTAACGGCTGGGAGTGCAAATTAGTTTCTGCTGCTGTAAGTATTACAGGCTGCTCATAA
ATGAAAAACAGTAAACAAAAAAAACAACAGGGTTTTACTCTGATCGAATTGATGATTGTGGTGGCGGTAATTGGTGTTTT
AGCTGCAATTGCGATCCCTCAATACCAAAATTATGTAAAGAAAAGTGCTTTGGGTACCGCATTAGCATCAGCAAGTGCTT
ACAAAATCATAGTTGAAGATGAGATTGCATCTACTGGTTCTTTCCCTGCAATTTCAGAAGCCTTCGGTATAGGAACAATC
AATGCGACCTCTGGTGCAGTTAGTACCAACGAAATAGTTGCGAGTATTACTGAAGGCGCAGGCAAAGGCCAAAAAGTAAA
ACTAGTACGAGATAGTAACGGCTGGGAGTGCAAATTAGTTTCTGCTGCTGTAAGTATTACAGGCTGCTCATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
48.649 |
100 |
0.554 |
| pilA | Vibrio cholerae strain A1552 |
48.649 |
100 |
0.554 |
| pilA | Vibrio cholerae C6706 |
48.649 |
100 |
0.554 |
| pilA | Vibrio campbellii strain DS40M4 |
37.908 |
100 |
0.446 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
40.141 |
100 |
0.438 |
| pilA | Acinetobacter baumannii strain A118 |
42.276 |
94.615 |
0.4 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
40.8 |
96.154 |
0.392 |
| pilA | Haemophilus influenzae 86-028NP |
44.144 |
85.385 |
0.377 |
| pilA2 | Legionella pneumophila str. Paris |
39.496 |
91.538 |
0.362 |
| comP | Acinetobacter baylyi ADP1 |
35.338 |
100 |
0.362 |