Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   A4W87_RS04875 Genome accession   NZ_CP017273
Coordinates   960898..961956 (-) Length   352 a.a.
NCBI ID   WP_025015780.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain TMW 1.1396     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 955898..966956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W87_RS04855 (A4W87_04810) - 956813..957736 (+) 924 WP_011374673.1 manganese-dependent inorganic pyrophosphatase -
  A4W87_RS04860 (A4W87_04815) - 957793..958146 (+) 354 WP_025015777.1 hypothetical protein -
  A4W87_RS04865 (A4W87_04820) - 958247..960042 (+) 1796 Protein_938 heavy metal translocating P-type ATPase -
  A4W87_RS04870 (A4W87_04825) thiT 960082..960684 (-) 603 WP_011374670.1 energy-coupled thiamine transporter ThiT -
  A4W87_RS04875 (A4W87_04830) xerS 960898..961956 (-) 1059 WP_025015780.1 tyrosine recombinase XerS Machinery gene
  A4W87_RS04880 (A4W87_04835) - 962652..963485 (-) 834 WP_076632503.1 alpha/beta hydrolase -
  A4W87_RS04885 (A4W87_04840) - 963516..964517 (-) 1002 WP_076632504.1 NADP-dependent oxidoreductase -
  A4W87_RS04890 (A4W87_04845) - 964519..965100 (-) 582 WP_076632505.1 TetR/AcrR family transcriptional regulator -
  A4W87_RS04895 (A4W87_04850) - 965228..966070 (-) 843 WP_076632506.1 DegV family protein -
  A4W87_RS04900 (A4W87_04855) - 966099..966737 (-) 639 WP_061827014.1 hemolysin III family protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 40719.63 Da        Isoelectric Point: 9.1623

>NTDB_id=167720 A4W87_RS04875 WP_025015780.1 960898..961956(-) (xerS) [Latilactobacillus sakei strain TMW 1.1396]
MDQQRYLELCEQRLADLPDYVRKFYINRQANAYSSATLYQYLQEYVRFFSWLIDEQIVTVQTTKDIPLVALDKMKLEDIE
LYKIFLMNKRKANNHKLSFQAVNRSINALNALWYFLTIEAEQADGEPYFYRNVMKKVKLLKSSETMATRSRHIGQKLLTG
DKKHDFIAFMQVDYPSALSNRQLASYTQNCERDIAICVLALTTGIRLSELAQANVSDLNLEQLTITVIRKGGQQDTVPIA
PWGLPYLQDYVQIRQQRYLAANERALFVTKYRGQAKRISNYAIEKLVAKYSEAFGVRLTPHKFRHTLATDLMSATHSETI
VATQLGQTTTQATHLYTHVVDDEQRSAMDKLE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=167720 A4W87_RS04875 WP_025015780.1 960898..961956(-) (xerS) [Latilactobacillus sakei strain TMW 1.1396]
ATGGACCAACAACGTTATCTCGAACTATGTGAACAACGCTTGGCGGATCTTCCCGATTACGTCCGTAAATTTTATATTAA
TCGGCAAGCCAATGCATACTCCTCTGCAACGCTCTATCAATATCTCCAAGAATACGTCCGCTTCTTCTCCTGGTTAATTG
ACGAACAAATCGTTACTGTTCAAACGACTAAGGATATCCCTCTTGTTGCGCTTGATAAGATGAAATTAGAAGATATCGAA
CTCTATAAGATCTTTTTAATGAATAAACGAAAAGCAAATAATCACAAGCTCTCCTTTCAGGCTGTTAATCGCTCTATCAA
CGCTTTGAATGCGCTCTGGTACTTCCTGACGATTGAAGCCGAACAAGCCGATGGTGAGCCTTATTTCTACCGCAACGTCA
TGAAAAAAGTCAAACTGCTCAAATCATCCGAGACAATGGCCACTCGTTCCCGCCATATCGGTCAAAAGTTGCTCACCGGT
GATAAAAAACACGACTTCATTGCCTTTATGCAAGTCGACTATCCCAGTGCGCTATCTAATCGCCAACTCGCTTCTTATAC
GCAGAATTGTGAACGGGATATTGCGATTTGCGTATTGGCACTCACTACCGGCATTCGTCTTTCCGAACTCGCCCAAGCTA
ACGTTTCTGATTTAAACCTTGAACAACTAACAATTACGGTTATTCGCAAAGGCGGTCAACAAGATACCGTGCCGATCGCA
CCTTGGGGTTTACCTTATCTGCAAGATTACGTTCAAATCCGGCAACAACGCTATTTAGCCGCTAACGAACGGGCCTTATT
TGTCACAAAGTATCGCGGTCAAGCGAAGCGAATCAGTAACTATGCCATTGAAAAACTGGTAGCTAAGTACTCTGAAGCTT
TTGGCGTTCGACTAACGCCGCATAAATTCCGTCATACACTCGCAACCGATCTGATGTCAGCGACCCACAGCGAAACGATC
GTAGCGACCCAATTGGGCCAAACCACCACGCAGGCCACCCATTTGTATACGCACGTGGTTGATGACGAACAGCGCTCGGC
AATGGATAAGCTCGAATGA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(190-340)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

46.067

100

0.466

Multiple sequence alignment