Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AL537_RS01440 Genome accession   NZ_CP014036
Coordinates   312624..313847 (+) Length   407 a.a.
NCBI ID   WP_005396687.1    Uniprot ID   -
Organism   Vibrio diabolicus strain FDAARGOS_105     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 307624..318847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL537_RS01420 (AL537_01420) ampD 308729..309280 (-) 552 WP_104970938.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  AL537_RS01425 (AL537_01425) nadC 309373..310260 (+) 888 WP_053809204.1 carboxylating nicotinate-nucleotide diphosphorylase -
  AL537_RS01430 (AL537_01430) pilA 310522..310914 (+) 393 WP_104970939.1 pilin Machinery gene
  AL537_RS01435 (AL537_01435) pilB 310915..312600 (+) 1686 WP_104970940.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AL537_RS01440 (AL537_01440) pilC 312624..313847 (+) 1224 WP_005396687.1 type II secretion system F family protein Machinery gene
  AL537_RS01445 (AL537_01445) pilD 313912..314781 (+) 870 WP_012841418.1 A24 family peptidase Machinery gene
  AL537_RS01450 (AL537_01450) coaE 314782..315396 (+) 615 WP_047008979.1 dephospho-CoA kinase -
  AL537_RS01455 (AL537_01455) zapD 315424..316164 (+) 741 WP_005396691.1 cell division protein ZapD -
  AL537_RS01460 (AL537_01460) yacG 316323..316517 (+) 195 WP_005396692.1 DNA gyrase inhibitor YacG -
  AL537_RS01465 (AL537_01465) rplS 317001..317354 (-) 354 WP_005379971.1 50S ribosomal protein L19 -
  AL537_RS01470 (AL537_01470) trmD 317396..318139 (-) 744 WP_005425529.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  AL537_RS01475 (AL537_01475) rimM 318167..318715 (-) 549 WP_005379964.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45327.52 Da        Isoelectric Point: 10.3992

>NTDB_id=167722 AL537_RS01440 WP_005396687.1 312624..313847(+) (pilC) [Vibrio diabolicus strain FDAARGOS_105]
MKSTTPQLKNFRWKGINSSGKKTSGQTLAMTEIEVRERLDAQHIKIKKLKKSSISFLTKLSHRVKGRDITVFTRQISTML
ITGVPLVQALKLVSENHKKAEMKSILMSVTRAVEAGTPMSKAMRTASEHFDPLYTDLIATGEQSGNLAEVFERLATYREK
NEQLRAKVIKALIYPAMIVLVALGVSFIMLTKVIPEFEKMFVGFGADLPWFTRQVLDLSAWTQNWSPFIALGSISLFISA
RILSKRSDSFRLMLNRSVLKFPVLGPVLSKAAIAKFSRTLATSFTAGIPILTSLKTTSKTSGNLHYQLAIEEVYRDTAAG
MPMYVAMRNCNVFPELVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLSKILEPLIIVFLGIVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=167722 AL537_RS01440 WP_005396687.1 312624..313847(+) (pilC) [Vibrio diabolicus strain FDAARGOS_105]
ATGAAAAGCACTACACCACAACTTAAAAACTTCCGCTGGAAAGGCATCAACAGTTCAGGCAAAAAGACGTCTGGACAAAC
CCTCGCGATGACAGAAATTGAAGTACGCGAGCGTCTAGACGCACAACACATCAAGATCAAGAAGTTAAAGAAAAGCAGTA
TCTCGTTTCTCACTAAACTCAGCCATCGCGTGAAAGGCAGAGACATCACGGTGTTTACCCGTCAGATTTCGACGATGTTG
ATAACTGGTGTCCCCTTAGTTCAGGCTTTAAAATTGGTCTCAGAAAACCATAAAAAAGCAGAGATGAAATCCATTTTGAT
GAGCGTAACACGCGCCGTCGAAGCGGGTACGCCCATGTCAAAAGCCATGCGCACTGCAAGTGAACACTTTGACCCACTCT
ATACCGACCTTATCGCAACAGGTGAGCAATCTGGTAACTTAGCGGAAGTGTTCGAGCGCTTAGCCACCTACCGAGAAAAA
AATGAGCAGCTTCGTGCGAAAGTGATCAAAGCACTGATTTACCCAGCCATGATAGTGCTAGTAGCGTTAGGCGTGTCGTT
TATCATGCTCACCAAAGTCATTCCCGAGTTTGAAAAAATGTTTGTTGGTTTTGGTGCTGATTTACCTTGGTTTACCAGGC
AAGTATTAGATCTTTCCGCCTGGACACAAAACTGGAGTCCGTTTATCGCACTAGGCTCCATTAGTTTATTCATCTCGGCG
AGAATCCTCTCTAAGCGTTCAGATTCTTTTCGCTTAATGCTCAACCGCTCTGTGCTTAAATTTCCTGTTCTGGGCCCTGT
ATTATCAAAAGCCGCTATCGCCAAATTTAGTCGAACACTCGCCACAAGCTTTACAGCGGGTATTCCAATTCTAACCAGTT
TAAAAACCACATCAAAAACCTCAGGAAACTTACACTATCAACTCGCCATAGAAGAAGTTTACCGTGATACCGCCGCAGGT
ATGCCAATGTATGTTGCCATGCGTAACTGTAATGTGTTTCCTGAATTAGTGTTACAAATGGTCATGATCGGTGAAGAGTC
TGGTCGACTTGACGATATGCTCAATAAAGTTGCAACGATCTACGAGTTTGAAGTCGATAACACCGTCGACAACCTTAGTA
AAATTCTAGAGCCGCTAATTATCGTTTTTTTAGGCATCGTTGTTGGCGGATTAGTGACAGCAATGTACTTGCCAATCTTT
AACTTAATGAGTGTATTGGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

86.978

100

0.87
  pilC Vibrio cholerae strain A1552

73.529

100

0.737
  pilC Acinetobacter baylyi ADP1

42.75

98.28

0.42
  pilC Acinetobacter baumannii D1279779

41.191

99.017

0.408
  pilG Neisseria gonorrhoeae MS11

40.247

99.509

0.4
  pilC Legionella pneumophila strain ERS1305867

40.049

100

0.4
  pilG Neisseria meningitidis 44/76-A

40

99.509

0.398
  pilC Pseudomonas stutzeri DSM 10701

40.657

97.297

0.396

Multiple sequence alignment