Detailed information NTG0167723

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AL537_RS01445
• Genome accession: NZ_CP014036
• Coordinates: 313912..314781 (+)
• Length: 289 a.a.
• NCBI ID: WP_012841418.1
• Uniprot ID: -
• Organism: Vibrio diabolicus strain FDAARGOS_105
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 308912..319781

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AL537_RS01425 (AL537_01425)	nadC	309373..310260 (+)	888	WP_053809204.1	carboxylating nicotinate-nucleotide diphosphorylase	-
AL537_RS01430 (AL537_01430)	pilA	310522..310914 (+)	393	WP_104970939.1	pilin	Machinery gene
AL537_RS01435 (AL537_01435)	pilB	310915..312600 (+)	1686	WP_104970940.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AL537_RS01440 (AL537_01440)	pilC	312624..313847 (+)	1224	WP_005396687.1	type II secretion system F family protein	Machinery gene
AL537_RS01445 (AL537_01445)	pilD	313912..314781 (+)	870	WP_012841418.1	A24 family peptidase	Machinery gene
AL537_RS01450 (AL537_01450)	coaE	314782..315396 (+)	615	WP_047008979.1	dephospho-CoA kinase	-
AL537_RS01455 (AL537_01455)	zapD	315424..316164 (+)	741	WP_005396691.1	cell division protein ZapD	-
AL537_RS01460 (AL537_01460)	yacG	316323..316517 (+)	195	WP_005396692.1	DNA gyrase inhibitor YacG	-
AL537_RS01465 (AL537_01465)	rplS	317001..317354 (-)	354	WP_005379971.1	50S ribosomal protein L19	-
AL537_RS01470 (AL537_01470)	trmD	317396..318139 (-)	744	WP_005425529.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
AL537_RS01475 (AL537_01475)	rimM	318167..318715 (-)	549	WP_005379964.1	ribosome maturation factor RimM	-
AL537_RS01480 (AL537_01480)	rpsP	318745..318993 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32523.70 Da
• Isoelectric Point: 7.0195

>NTDB_id=167723 AL537_RS01445 WP_012841418.1 313912..314781(+) (pilD) [Vibrio diabolicus strain FDAARGOS_105]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKEVLTLSVPRSSCQKCATPIRIR
DNIPVISWLLLKGKCHNCQTAISARYPLIELLTAFCSGFVAYHFGFSYFTVALLFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIALALVEISPVTLQDSVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGI
VFGIIQLRLQKQGIEKAFPFGPYLAIAGWISLIWGDQILNWYFTSVLGV

Nucleotide

• Length: 870 bp

>NTDB_id=167723 AL537_RS01445 WP_012841418.1 313912..314781(+) (pilD) [Vibrio diabolicus strain FDAARGOS_105]
ATGGAAGTATTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCACCATCTTCGGTCTGATCGTGGGTAGCTTCCTCAA
TGTGGTTATTTATCGACTACCTAAAATCATGGAACTAGAATGGCGACGCGAATGTGCCGAGTCATTTCCTGAATACAAAA
TAGAACCTCCTAAAGAAGTGCTGACCTTGAGCGTCCCACGCTCCTCCTGTCAGAAGTGCGCAACGCCGATACGTATTCGA
GACAACATCCCTGTGATTAGCTGGCTGCTTTTAAAAGGCAAATGCCACAACTGTCAGACAGCCATTAGCGCACGCTATCC
ACTGATTGAACTGCTCACTGCGTTCTGCTCAGGCTTTGTCGCTTACCACTTTGGTTTTAGTTACTTTACCGTTGCCCTAC
TCTTTTTCACTTTTATCTTAATCGCCGCAACATTTATCGATCTCGATACTATGTTGTTACCTGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCCTTAGCACTAGTCGAAATAAGTCCTGTTACTCTACAAGATTCTGTCATTGGTGCTATTGC
TGGTTACCTATGTCTCTGGTCCGTTTACTGGGGCTTTAAGCTACTTACTGGTAAAGAAGGAATGGGATATGGTGATTTTA
AACTACTCGCAGCACTAGGGGCTTGGCTGGGCTGGCAGTCACTGCCGATGATCATTCTACTTTCTTCTGTGGTTGGCATC
GTATTTGGCATCATTCAACTACGCTTGCAAAAACAGGGAATTGAAAAAGCTTTTCCTTTCGGTCCTTACTTAGCAATTGC
TGGTTGGATAAGCTTAATTTGGGGAGACCAGATTTTAAACTGGTACTTTACTTCAGTTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	91.003	100	0.91
pilD	Vibrio cholerae strain A1552	72.917	99.654	0.727
pilD	Acinetobacter baumannii D1279779	52.593	93.426	0.491
pilD	Acinetobacter nosocomialis M2	52.222	93.426	0.488
pilD	Neisseria gonorrhoeae MS11	48.551	95.502	0.464