Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   CPIN17262_RS08510 Genome accession   NZ_CP012548
Coordinates   323499..323615 (+) Length   38 a.a.
NCBI ID   WP_418228279.1    Uniprot ID   -
Organism   Campylobacter pinnipediorum subsp. pinnipediorum strain RM17262     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 318499..328615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPIN17262_RS01625 (CPIN17262_0322) - 319092..320258 (+) 1167 WP_078405863.1 efflux RND transporter periplasmic adaptor subunit -
  CPIN17262_RS01630 (CPIN17262_0323) - 320263..322185 (+) 1923 WP_078405864.1 ABC transporter permease -
  CPIN17262_RS01640 (CPIN17262_0324) - 322850..323320 (+) 471 WP_078405866.1 type II secretion system protein -
  CPIN17262_RS08510 ctsG 323499..323615 (+) 117 WP_418228279.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  CPIN17262_RS01650 (CPIN17262_0325) - 323715..324029 (+) 315 WP_078405867.1 hypothetical protein -
  CPIN17262_RS01655 (CPIN17262_0326) - 324141..324857 (+) 717 WP_078405868.1 thioredoxin fold domain-containing protein -
  CPIN17262_RS01660 (CPIN17262_0327) - 325222..326340 (-) 1119 WP_078405869.1 sensor histidine kinase -
  CPIN17262_RS01665 (CPIN17262_0328) - 326324..326995 (-) 672 WP_069637747.1 response regulator transcription factor -
  CPIN17262_RS01670 (CPIN17262_0329) nrfD 326995..327930 (-) 936 WP_078405870.1 NrfD/PsrC family molybdoenzyme membrane anchor subunit -
  CPIN17262_RS01675 (CPIN17262_0330) - 327923..328486 (-) 564 WP_069636561.1 4Fe-4S dicluster domain-containing protein -

Sequence

Protein


Download         Length: 38 a.a.        Molecular weight: 4157.17 Da        Isoelectric Point: 6.0828

>NTDB_id=155113 CPIN17262_RS08510 WP_418228279.1 323499..323615(+) (ctsG) [Campylobacter pinnipediorum subsp. pinnipediorum strain RM17262]
MKKAFTMIELVFVIVILGILAAISIPKLIATRDDAEIV

Nucleotide


Download         Length: 117 bp        

>NTDB_id=155113 CPIN17262_RS08510 WP_418228279.1 323499..323615(+) (ctsG) [Campylobacter pinnipediorum subsp. pinnipediorum strain RM17262]
ATGAAAAAAGCTTTTACGATGATAGAACTTGTATTTGTTATAGTGATACTTGGCATACTAGCAGCTATCTCTATACCAAA
ACTTATAGCAACAAGAGATGATGCCGAGATAGTGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

64.865

97.368

0.632
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

52.632

100

0.526
  pilV Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.545

86.842

0.474
  pilA/pilAI Pseudomonas stutzeri DSM 10701

61.538

68.421

0.421
  pilA Ralstonia pseudosolanacearum GMI1000

61.538

68.421

0.421
  comGC Latilactobacillus sakei subsp. sakei 23K

42.857

92.105

0.395
  pilE Neisseria gonorrhoeae strain FA1090

57.692

68.421

0.395
  pilE Neisseria gonorrhoeae MS11

57.692

68.421

0.395
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

51.852

71.053

0.368
  pilA/pilA1 Synechocystis sp. PCC 6803

51.852

71.053

0.368
  pilA Vibrio cholerae strain A1552

51.852

71.053

0.368
  pilA Vibrio cholerae C6706

51.852

71.053

0.368
  pilA Vibrio campbellii strain DS40M4

56

65.789

0.368
  pilY2 Acinetobacter baumannii D1279779

58.333

63.158

0.368

Multiple sequence alignment