Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   DE10444_RS06940 Genome accession   NZ_CP012392
Coordinates   1351182..1351850 (-) Length   222 a.a.
NCBI ID   WP_002259882.1    Uniprot ID   -
Organism   Neisseria meningitidis strain DE10444     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1346182..1356850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DE10444_RS06920 (DE10444_1290) pilX 1348532..1349005 (-) 474 WP_002230430.1 PilX family type IV pilin Machinery gene
  DE10444_RS06925 (DE10444_1291) pilK 1349010..1349603 (-) 594 WP_002229321.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  DE10444_RS06930 (DE10444_1292) pilJ 1349582..1350535 (-) 954 WP_002259883.1 PilW family protein Machinery gene
  DE10444_RS06935 (DE10444_1293) pilV 1350532..1351152 (-) 621 WP_002253554.1 type IV pilus modification protein PilV Machinery gene
  DE10444_RS06940 (DE10444_1294) pilH 1351182..1351850 (-) 669 WP_002259882.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  DE10444_RS06945 (DE10444_1295) dnaB 1352152..1353558 (-) 1407 WP_002219448.1 replicative DNA helicase -
  DE10444_RS06950 (DE10444_1296) - 1353721..1354308 (+) 588 WP_002222659.1 superoxide dismutase -
  DE10444_RS06955 (DE10444_1297) - 1355559..1356068 (-) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  DE10444_RS06960 (DE10444_1298) - 1356400..1356732 (-) 333 WP_002229316.1 hypothetical protein -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24781.37 Da        Isoelectric Point: 9.9145

>NTDB_id=154128 DE10444_RS06940 WP_002259882.1 1351182..1351850(-) (pilH) [Neisseria meningitidis strain DE10444]
MCTRKQQGFTLTELLIVMVIAAIMAMIALPNMSQWIASRRIASHAERIANLLRFSRGEAVRLNLPVYICPVQVKKGGAPN
NKCDFGKKGQGMLAFGDKNGNKTYDGDTADVLLRSVVLNDDINDKRINYAFNHIAFGQTQPTADRVVWTFNQNGTFGYST
NQDLTNTSRFVYSDGYIQIVLTDARAVSDADKKFRSAVVLINSSGRVEVCPRNDRRTVCQYK

Nucleotide


Download         Length: 669 bp        

>NTDB_id=154128 DE10444_RS06940 WP_002259882.1 1351182..1351850(-) (pilH) [Neisseria meningitidis strain DE10444]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGTCATTGCAGCCATTATGGCGATGAT
AGCCCTCCCCAATATGAGCCAATGGATTGCATCCCGCCGCATTGCCAGTCATGCGGAGCGGATTGCCAACCTTTTGCGTT
TCTCCAGGGGAGAAGCCGTCCGGCTCAATCTTCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGGCGGTGCGCCCAAC
AATAAATGTGACTTCGGCAAGAAGGGGCAGGGAATGTTGGCTTTTGGCGATAAGAATGGCAATAAGACATATGACGGCGA
TACGGCGGATGTTCTCCTTCGCAGTGTGGTATTGAATGATGATATCAATGATAAGCGGATTAATTATGCCTTTAACCATA
TCGCTTTCGGTCAAACGCAGCCGACCGCTGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATTCTACC
AATCAGGATCTCACGAATACTTCCAGATTTGTTTACTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTAACAGCAGCGGCAGGGTTGAGGTTTGTCCTAGAAACG
ATAGGCGTACCGTATGCCAATATAAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

85.068

99.55

0.847

Multiple sequence alignment