Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   DE10444_RS06930 Genome accession   NZ_CP012392
Coordinates   1349582..1350535 (-) Length   317 a.a.
NCBI ID   WP_002259883.1    Uniprot ID   -
Organism   Neisseria meningitidis strain DE10444     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1344582..1355535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DE10444_RS06910 (DE10444_1288) dut 1345521..1345973 (-) 453 WP_002229326.1 dUTP diphosphatase -
  DE10444_RS06915 (DE10444_1289) - 1346115..1346543 (+) 429 Protein_1282 AzlC family ABC transporter permease -
  DE10444_RS06920 (DE10444_1290) pilX 1348532..1349005 (-) 474 WP_002230430.1 PilX family type IV pilin Machinery gene
  DE10444_RS06925 (DE10444_1291) pilK 1349010..1349603 (-) 594 WP_002229321.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  DE10444_RS06930 (DE10444_1292) pilJ 1349582..1350535 (-) 954 WP_002259883.1 PilW family protein Machinery gene
  DE10444_RS06935 (DE10444_1293) pilV 1350532..1351152 (-) 621 WP_002253554.1 type IV pilus modification protein PilV Machinery gene
  DE10444_RS06940 (DE10444_1294) pilH 1351182..1351850 (-) 669 WP_002259882.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  DE10444_RS06945 (DE10444_1295) dnaB 1352152..1353558 (-) 1407 WP_002219448.1 replicative DNA helicase -
  DE10444_RS06950 (DE10444_1296) - 1353721..1354308 (+) 588 WP_002222659.1 superoxide dismutase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35030.78 Da        Isoelectric Point: 8.4318

>NTDB_id=154126 DE10444_RS06930 WP_002259883.1 1349582..1350535(-) (pilJ) [Neisseria meningitidis strain DE10444]
MRRKMLNVPKGSYDGMKGFTIIEFLVAGMLSMIVLMAVGSSYFTSRKLNDAANERLAIQQDLRNAATLIVRDARMAGSFG
CFNMSEHIEQDVVSDVTQKDSLFSLKRNSTRNSTNKLIPIAESSNIGYQGFIQRLNALIFQYGIDDVNASADTTVVSSCA
AISKPGKQILNLEDVKKELKIVSQDKERNGNIARQRHVVNAYAVGRIAGEEGLFRFQLNEKGEWGNPQLLVKKINKMDIR
YIYVSGCPEDDDAGKEETFRYTDKFNSAQDAVTPAGVEVLLSSGTDTKIAASSDNHIYAYRIDATIRGGNVCANRTL

Nucleotide


Download         Length: 954 bp        

>NTDB_id=154126 DE10444_RS06930 WP_002259883.1 1349582..1350535(-) (pilJ) [Neisseria meningitidis strain DE10444]
ATGAGACGTAAAATGCTAAACGTACCAAAAGGCAGTTATGATGGTATGAAAGGTTTTACCATTATTGAATTTTTGGTTGC
GGGCATGCTCAGTATGATTGTCCTGATGGCGGTCGGATCGAGTTACTTCACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCTATTCAACAGGATTTGCGGAATGCGGCAACATTAATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATATCGAACAGGATGTTGTTTCCGATGTGACGCAAAAAGACTCTCTTTTTTCCTTAAAAAG
GAACAGTACAAGGAACAGTACAAATAAACTTATCCCCATAGCGGAATCTTCAAATATCGGATATCAGGGTTTTATCCAGC
GCCTTAACGCATTGATTTTCCAATACGGAATCGATGATGTTAATGCAAGCGCCGATACTACCGTCGTCAGCAGCTGTGCC
GCAATATCGAAACCGGGTAAGCAAATCCTTAATTTAGAAGATGTAAAAAAAGAATTGAAGATTGTGAGTCAGGATAAGGA
GCGAAATGGCAATATAGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGATTGCCGGTGAGGAAGGTTTGT
TCCGCTTCCAATTGAATGAAAAGGGCGAGTGGGGTAATCCTCAGTTGTTGGTTAAAAAGATTAATAAAATGGATATACGG
TATATTTATGTTTCCGGCTGTCCTGAAGATGACGATGCCGGCAAAGAGGAAACATTCAGATATACGGATAAATTCAACAG
CGCCCAAGATGCTGTTACGCCTGCCGGGGTGGAGGTTTTATTGAGTAGCGGTACTGATACCAAGATTGCCGCTTCTTCAG
ACAATCATATTTATGCTTACCGTATCGATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACACTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

82.334

100

0.823

Multiple sequence alignment