Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   DE10444_RS06935 Genome accession   NZ_CP012392
Coordinates   1350532..1351152 (-) Length   206 a.a.
NCBI ID   WP_002253554.1    Uniprot ID   -
Organism   Neisseria meningitidis strain DE10444     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1345532..1356152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DE10444_RS06915 (DE10444_1289) - 1346115..1346543 (+) 429 Protein_1282 AzlC family ABC transporter permease -
  DE10444_RS06920 (DE10444_1290) pilX 1348532..1349005 (-) 474 WP_002230430.1 PilX family type IV pilin Machinery gene
  DE10444_RS06925 (DE10444_1291) pilK 1349010..1349603 (-) 594 WP_002229321.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  DE10444_RS06930 (DE10444_1292) pilJ 1349582..1350535 (-) 954 WP_002259883.1 PilW family protein Machinery gene
  DE10444_RS06935 (DE10444_1293) pilV 1350532..1351152 (-) 621 WP_002253554.1 type IV pilus modification protein PilV Machinery gene
  DE10444_RS06940 (DE10444_1294) pilH 1351182..1351850 (-) 669 WP_002259882.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  DE10444_RS06945 (DE10444_1295) dnaB 1352152..1353558 (-) 1407 WP_002219448.1 replicative DNA helicase -
  DE10444_RS06950 (DE10444_1296) - 1353721..1354308 (+) 588 WP_002222659.1 superoxide dismutase -
  DE10444_RS06955 (DE10444_1297) - 1355559..1356068 (-) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 22375.31 Da        Isoelectric Point: 4.9853

>NTDB_id=154127 DE10444_RS06935 WP_002253554.1 1350532..1351152(-) (pilV) [Neisseria meningitidis strain DE10444]
MKNNDCFRLKNPQSGMALIEVLVAMLVLTIGILALLSVQLRTVASVREAETQTIVSQITQNLMEGMLMNPTIDSDSNKKN
YNLYMGNNTLSHTLSAVDGEFAIDAIKTKTQLAEAQLKRFSYELKNALPDAAAIHYAVCKDSSGNAPTFSGNAFSSNCDN
KANGDTLIKVLWVNDSAGDSDISRTNLEVSGDNIVYTYQARVGGRE

Nucleotide


Download         Length: 621 bp        

>NTDB_id=154127 DE10444_RS06935 WP_002253554.1 1350532..1351152(-) (pilV) [Neisseria meningitidis strain DE10444]
ATGAAGAATAATGATTGCTTCCGCCTGAAAAACCCCCAGTCCGGTATGGCGCTGATAGAAGTCTTGGTTGCTATGCTCGT
TCTGACCATCGGTATTTTGGCGTTACTGTCTGTGCAGTTGCGGACAGTCGCTTCCGTCAGGGAGGCGGAGACACAAACCA
TCGTCAGCCAAATCACGCAAAACCTGATGGAAGGAATGTTGATGAATCCGACCATTGATTCGGACAGCAACAAGAAAAAC
TATAATCTTTACATGGGAAACAATACACTATCGCATACACTATCAGCTGTGGATGGTGAGTTTGCGATTGATGCCATAAA
AACTAAGACACAGTTGGCAGAGGCACAATTGAAGAGATTTAGTTATGAGCTGAAAAATGCCTTGCCGGATGCGGCAGCCA
TCCATTACGCCGTCTGCAAGGATTCGTCGGGTAACGCGCCGACATTCTCCGGCAATGCTTTTTCTTCAAATTGCGACAAT
AAGGCAAACGGGGATACTTTAATTAAAGTATTGTGGGTAAATGATTCGGCAGGGGATTCGGATATTTCCCGTACGAATCT
TGAGGTGAGCGGCGACAATATCGTATATACCTATCAGGCAAGGGTCGGAGGTCGGGAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Neisseria meningitidis 8013

96.602

100

0.966
  pilI Neisseria gonorrhoeae MS11

83.495

100

0.835
  pilV Neisseria gonorrhoeae MS11

83.495

100

0.835

Multiple sequence alignment