Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   DE10444_RS06920 Genome accession   NZ_CP012392
Coordinates   1348532..1349005 (-) Length   157 a.a.
NCBI ID   WP_002230430.1    Uniprot ID   -
Organism   Neisseria meningitidis strain DE10444     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1343532..1354005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DE10444_RS06905 (DE10444_1287) dapC 1344257..1345444 (-) 1188 WP_002259885.1 succinyldiaminopimelate transaminase -
  DE10444_RS06910 (DE10444_1288) dut 1345521..1345973 (-) 453 WP_002229326.1 dUTP diphosphatase -
  DE10444_RS06915 (DE10444_1289) - 1346115..1346543 (+) 429 Protein_1282 AzlC family ABC transporter permease -
  DE10444_RS06920 (DE10444_1290) pilX 1348532..1349005 (-) 474 WP_002230430.1 PilX family type IV pilin Machinery gene
  DE10444_RS06925 (DE10444_1291) pilK 1349010..1349603 (-) 594 WP_002229321.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  DE10444_RS06930 (DE10444_1292) pilJ 1349582..1350535 (-) 954 WP_002259883.1 PilW family protein Machinery gene
  DE10444_RS06935 (DE10444_1293) pilV 1350532..1351152 (-) 621 WP_002253554.1 type IV pilus modification protein PilV Machinery gene
  DE10444_RS06940 (DE10444_1294) pilH 1351182..1351850 (-) 669 WP_002259882.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  DE10444_RS06945 (DE10444_1295) dnaB 1352152..1353558 (-) 1407 WP_002219448.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17472.18 Da        Isoelectric Point: 9.1946

>NTDB_id=154124 DE10444_RS06920 WP_002230430.1 1348532..1349005(-) (pilX) [Neisseria meningitidis strain DE10444]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNISKQFILKNPLDDNQTIKSKLEIFVSGYKM
NPKIAEKYNVSVHFVNKEKPRAYSLVGVPKTGTGYTLSVWMNSVGDGYKCRDAASAQAHLETLSSDAGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=154124 DE10444_RS06920 WP_002230430.1 1348532..1349005(-) (pilX) [Neisseria meningitidis strain DE10444]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTCGTCGCGATACTCGGCATTATCAGCGTCATTGCCATACC
TTCTTATCAAAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATATTTCCAAAC
AGTTTATTTTGAAAAATCCCCTGGACGATAATCAGACCATCAAGAGCAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCGAAAAATATAATGTTTCGGTGCATTTTGTCAATAAGGAAAAACCAAGGGCATACAGCTTGGTCGG
CGTTCCAAAGACGGGGACGGGTTATACTTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCG
CTTCTGCCCAAGCCCATTTGGAGACCTTGTCCTCAGATGCCGGCTGTGAAGCCTTCTCTAATCGTAAAAAATAA

Domains

Predicted by InterproScan.

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Neisseria meningitidis 8013

98.089

100

0.981
  pilL Neisseria gonorrhoeae MS11

87.261

100

0.873

Multiple sequence alignment