Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   DE10444_RS06925 Genome accession   NZ_CP012392
Coordinates   1349010..1349603 (-) Length   197 a.a.
NCBI ID   WP_002229321.1    Uniprot ID   -
Organism   Neisseria meningitidis strain DE10444     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1344010..1354603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DE10444_RS06905 (DE10444_1287) dapC 1344257..1345444 (-) 1188 WP_002259885.1 succinyldiaminopimelate transaminase -
  DE10444_RS06910 (DE10444_1288) dut 1345521..1345973 (-) 453 WP_002229326.1 dUTP diphosphatase -
  DE10444_RS06915 (DE10444_1289) - 1346115..1346543 (+) 429 Protein_1282 AzlC family ABC transporter permease -
  DE10444_RS06920 (DE10444_1290) pilX 1348532..1349005 (-) 474 WP_002230430.1 PilX family type IV pilin Machinery gene
  DE10444_RS06925 (DE10444_1291) pilK 1349010..1349603 (-) 594 WP_002229321.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  DE10444_RS06930 (DE10444_1292) pilJ 1349582..1350535 (-) 954 WP_002259883.1 PilW family protein Machinery gene
  DE10444_RS06935 (DE10444_1293) pilV 1350532..1351152 (-) 621 WP_002253554.1 type IV pilus modification protein PilV Machinery gene
  DE10444_RS06940 (DE10444_1294) pilH 1351182..1351850 (-) 669 WP_002259882.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  DE10444_RS06945 (DE10444_1295) dnaB 1352152..1353558 (-) 1407 WP_002219448.1 replicative DNA helicase -
  DE10444_RS06950 (DE10444_1296) - 1353721..1354308 (+) 588 WP_002222659.1 superoxide dismutase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21655.53 Da        Isoelectric Point: 7.5809

>NTDB_id=154125 DE10444_RS06925 WP_002229321.1 1349010..1349603(-) (pilK) [Neisseria meningitidis strain DE10444]
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGELQVLDLEYDT
DSKVTFSENCGKGLCTAVNVRTNNDNEEAFDNIVVQGKPTVEAVKRSCPANSTNLCIDNKGTKYKKGTQSVSKMPRYIIE
YLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 594 bp        

>NTDB_id=154125 DE10444_RS06925 WP_002229321.1 1349010..1349603(-) (pilK) [Neisseria meningitidis strain DE10444]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTTGCACTGTTTATCGTGCTGATGGT
GATGATCGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTGGCCGAGGCGGCTTTGCGGGAAGGCGAACTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGCGAAAACTGTGGAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATAATGATAATGA
AGAGGCTTTTGACAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAATTCTACCA
ACCTGTGCATTGACAATAAAGGGACGAAATATAAGAAAGGCACGCAAAGCGTCAGCAAAATGCCACGTTATATTATCGAA
TATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGTGGTCGT
CCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-192)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

87.129

100

0.893

Multiple sequence alignment