Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   A6M16_RS00790 Genome accession   NZ_CP015557
Coordinates   123679..124086 (+) Length   135 a.a.
NCBI ID   WP_024387070.1    Uniprot ID   -
Organism   Streptococcus suis strain DN13     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 118679..129086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6M16_RS00765 (A6M16_00765) - 120080..120445 (+) 366 WP_024417409.1 DUF1033 family protein -
  A6M16_RS00770 (A6M16_00770) - 120480..121430 (-) 951 WP_024417410.1 S66 family peptidase -
  A6M16_RS00775 (A6M16_00775) comGA 121516..122466 (+) 951 WP_024417411.1 competence type IV pilus ATPase ComGA Machinery gene
  A6M16_RS00780 (A6M16_00780) comGB 122378..123415 (+) 1038 WP_255195823.1 competence type IV pilus assembly protein ComGB Machinery gene
  A6M16_RS00785 (A6M16_00785) comGC 123417..123698 (+) 282 WP_009909092.1 competence type IV pilus major pilin ComGC Machinery gene
  A6M16_RS00790 (A6M16_00790) comGD 123679..124086 (+) 408 WP_024387070.1 competence type IV pilus minor pilin ComGD Machinery gene
  A6M16_RS00795 (A6M16_00795) comGE 124058..124351 (+) 294 WP_024390433.1 competence type IV pilus minor pilin ComGE Machinery gene
  A6M16_RS00800 (A6M16_00800) comGF/cglF 124338..124772 (+) 435 WP_063725150.1 competence type IV pilus minor pilin ComGF Machinery gene
  A6M16_RS00805 (A6M16_00805) comGG 124750..125160 (+) 411 WP_009909099.1 competence type IV pilus minor pilin ComGG -
  A6M16_RS00810 (A6M16_00810) comGH 125217..126170 (+) 954 WP_024409299.1 class I SAM-dependent methyltransferase Machinery gene
  A6M16_RS00815 (A6M16_00815) - 126220..127407 (+) 1188 WP_014637319.1 acetate kinase -
  A6M16_RS00820 (A6M16_00820) - 127722..128273 (+) 552 WP_024417413.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 15383.73 Da        Isoelectric Point: 10.1522

>NTDB_id=154129 A6M16_RS00790 WP_024387070.1 123679..124086(+) (comGD) [Streptococcus suis strain DN13]
MLRRKNKAFTLFESLLTLLVVSFLAISLSGTVQTVFRSVQEEIFLWEFEAIYKDSQKLAASSRQAVSLSIGGQEVSNGSQ
IVKVPRNVEILEEKAIRFEEDGGNSSLTKIRFRLRQKIVTYQLYIGSGRYKKTEE

Nucleotide


Download         Length: 408 bp        

>NTDB_id=154129 A6M16_RS00790 WP_024387070.1 123679..124086(+) (comGD) [Streptococcus suis strain DN13]
ATGCTGCGGCGAAAAAATAAGGCTTTTACCCTGTTTGAAAGTCTGCTGACCTTGTTGGTTGTCAGCTTTCTGGCAATCAG
CCTGTCGGGAACAGTACAAACGGTCTTTCGGTCTGTTCAGGAAGAAATTTTTCTCTGGGAATTTGAGGCCATCTATAAAG
ACAGTCAGAAATTGGCAGCCAGTTCCCGCCAAGCAGTTAGTCTTTCTATCGGTGGACAAGAAGTGTCAAATGGCAGTCAG
ATAGTGAAAGTGCCAAGAAACGTGGAAATCTTGGAGGAGAAAGCTATCCGATTTGAAGAAGATGGTGGAAATTCTTCTCT
GACCAAGATTCGTTTTCGGCTTAGGCAAAAAATAGTCACGTATCAATTATATATAGGGAGTGGTCGCTATAAGAAAACAG
AAGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus mutans UA140

48.062

95.556

0.459
  comGD Streptococcus mutans UA159

48.062

95.556

0.459
  comGD/cglD Streptococcus pneumoniae R6

46.512

95.556

0.444
  comGD/cglD Streptococcus pneumoniae TIGR4

46.512

95.556

0.444
  comGD/cglD Streptococcus pneumoniae Rx1

46.512

95.556

0.444
  comGD/cglD Streptococcus pneumoniae D39

46.512

95.556

0.444
  comGD Streptococcus gordonii str. Challis substr. CH1

47.244

94.074

0.444
  comGD/cglD Streptococcus mitis SK321

45.736

95.556

0.437
  comGD/cglD Streptococcus mitis NCTC 12261

45.736

95.556

0.437
  comGD Lactococcus lactis subsp. cremoris KW2

38.281

94.815

0.363

Multiple sequence alignment