Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   AVT04_RS04120 Genome accession   NZ_CP013939
Coordinates   783309..783806 (-) Length   165 a.a.
NCBI ID   WP_002949220.1    Uniprot ID   Q5M6C4
Organism   Streptococcus thermophilus strain S9     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 778309..788806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVT04_RS04100 (AVT04_04100) - 778349..779953 (-) 1605 WP_002949230.1 CTP synthase -
  AVT04_RS04105 (AVT04_04105) rpoE 780204..780785 (-) 582 WP_011225340.1 DNA-directed RNA polymerase subunit delta -
  AVT04_RS04110 (AVT04_04110) tig 780943..782226 (-) 1284 WP_011225339.1 trigger factor -
  AVT04_RS04115 (AVT04_04115) - 782367..783209 (+) 843 WP_011225338.1 mechanosensitive ion channel family protein -
  AVT04_RS04120 (AVT04_04120) comX 783309..783806 (-) 498 WP_002949220.1 sigma factor Regulator
  AVT04_RS09855 - 784098..784202 (-) 105 Protein_790 IS200/IS605 family transposase -
  AVT04_RS04125 (AVT04_04125) - 784560..785024 (+) 465 Protein_791 transposase family protein -
  AVT04_RS04130 (AVT04_04130) - 785284..786474 (-) 1191 WP_002949216.1 SAM-dependent methyltransferase -
  AVT04_RS04135 (AVT04_04135) - 786556..786882 (-) 327 WP_082302972.1 M20/M25/M40 family metallo-hydrolase -
  AVT04_RS10375 - 787071..787393 (+) 323 Protein_794 transposase -
  AVT04_RS04145 (AVT04_04145) - 787478..787699 (-) 222 WP_002948904.1 DUF4649 family protein -
  AVT04_RS04150 (AVT04_04150) - 787992..788806 (+) 815 Protein_796 ISL3 family transposase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 20160.12 Da        Isoelectric Point: 5.2073

>NTDB_id=143209 AVT04_RS04120 WP_002949220.1 783309..783806(-) (comX) [Streptococcus thermophilus strain S9]
MEQEVFVKAYEKVRPIVLKAFRQYFIQLWDQADMEQEAMMTLYQLLKKFPDLEKDDDKLRRYFKTKFRNRLNDEVRRQES
VKRQANRQCYVEISDIAFCIPNKELDMVDRLAYDEQLNAFREQLSSEDSLKLDRLLGGECFRGRKKMIRELRFWMVDFDP
CNEED

Nucleotide


Download         Length: 498 bp        

>NTDB_id=143209 AVT04_RS04120 WP_002949220.1 783309..783806(-) (comX) [Streptococcus thermophilus strain S9]
ATGGAACAAGAAGTTTTTGTTAAGGCATATGAAAAGGTAAGGCCAATTGTACTTAAGGCTTTTAGGCAATACTTTATTCA
GCTTTGGGATCAAGCTGACATGGAGCAAGAGGCGATGATGACTTTGTATCAGCTTTTAAAAAAGTTTCCTGATTTAGAGA
AAGATGATGATAAGTTACGTCGTTACTTTAAAACTAAGTTTAGGAATCGACTTAATGATGAAGTGAGGCGGCAGGAGTCA
GTAAAACGTCAAGCTAATAGACAGTGCTATGTTGAAATTTCAGATATTGCCTTTTGTATTCCCAATAAGGAGCTAGATAT
GGTTGATAGACTTGCTTATGATGAACAGCTTAATGCATTTCGTGAGCAGTTATCATCGGAAGATTCTCTTAAGTTGGATC
GATTGTTGGGTGGTGAATGCTTTAGGGGAAGGAAAAAGATGATACGAGAGTTAAGATTTTGGATGGTTGACTTTGATCCA
TGTAATGAAGAAGACTGA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(10-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M6C4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.