Detailed information
Bioinformatically predicted
Overview
| Name | pilA2 | Type | Machinery gene |
| Locus tag | LC55x_RS18940 | Genome accession | NZ_CP011130 |
| Coordinates | 4722060..4722485 (+) | Length | 141 a.a. |
| NCBI ID | WP_057922445.1 | Uniprot ID | - |
| Organism | Lysobacter capsici strain 55 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4717060..4727485
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LC55x_RS18930 (LC55x_4254) | - | 4718389..4720014 (+) | 1626 | WP_057922444.1 | ATP-binding protein | - |
| LC55x_RS18935 (LC55x_4255) | pilR | 4720100..4721509 (+) | 1410 | WP_036104561.1 | sigma-54 dependent transcriptional regulator | Regulator |
| LC55x_RS18940 (LC55x_4256) | pilA2 | 4722060..4722485 (+) | 426 | WP_057922445.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| LC55x_RS28400 | - | 4722646..4723071 (+) | 426 | WP_057922446.1 | pilin | - |
| LC55x_RS18950 (LC55x_4257) | pilB | 4723256..4724983 (+) | 1728 | WP_057922447.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| LC55x_RS18955 (LC55x_4258) | pilC | 4724987..4726258 (+) | 1272 | WP_057922448.1 | type II secretion system F family protein | Machinery gene |
| LC55x_RS18960 (LC55x_4259) | - | 4726280..4727167 (+) | 888 | WP_036104586.1 | A24 family peptidase | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 14639.60 Da Isoelectric Point: 4.5337
>NTDB_id=142620 LC55x_RS18940 WP_057922445.1 4722060..4722485(+) (pilA2) [Lysobacter capsici strain 55]
MKKQQGFTLIELMIVIAILGILIAIALPAYQNYTIRTKNAECLNVAAGAKLAVAETAQDRGSLANITDTNHGYEFQASDY
CASVGITAGTGVVTAVTNGATTGGGTVTFLLTPTAAAGRLEWECTASGQDNEAQIPAECRQ
MKKQQGFTLIELMIVIAILGILIAIALPAYQNYTIRTKNAECLNVAAGAKLAVAETAQDRGSLANITDTNHGYEFQASDY
CASVGITAGTGVVTAVTNGATTGGGTVTFLLTPTAAAGRLEWECTASGQDNEAQIPAECRQ
Nucleotide
Download Length: 426 bp
>NTDB_id=142620 LC55x_RS18940 WP_057922445.1 4722060..4722485(+) (pilA2) [Lysobacter capsici strain 55]
ATGAAGAAGCAGCAAGGCTTTACCCTCATCGAACTGATGATCGTCATCGCGATCCTCGGCATCCTGATCGCCATCGCTCT
GCCGGCGTACCAGAACTACACCATCCGCACCAAGAACGCCGAGTGCCTGAACGTCGCCGCTGGCGCCAAGCTGGCAGTCG
CCGAGACCGCACAGGATCGCGGCTCGCTGGCGAACATCACCGACACCAACCATGGCTACGAGTTCCAGGCCAGCGATTAC
TGCGCCTCGGTTGGCATCACCGCGGGAACTGGCGTCGTCACCGCCGTCACCAACGGTGCCACGACCGGCGGCGGCACTGT
GACCTTCCTGCTTACCCCGACCGCAGCTGCTGGCCGCCTGGAGTGGGAATGCACCGCTTCCGGCCAGGACAATGAAGCTC
AGATTCCTGCCGAGTGCCGTCAGTAA
ATGAAGAAGCAGCAAGGCTTTACCCTCATCGAACTGATGATCGTCATCGCGATCCTCGGCATCCTGATCGCCATCGCTCT
GCCGGCGTACCAGAACTACACCATCCGCACCAAGAACGCCGAGTGCCTGAACGTCGCCGCTGGCGCCAAGCTGGCAGTCG
CCGAGACCGCACAGGATCGCGGCTCGCTGGCGAACATCACCGACACCAACCATGGCTACGAGTTCCAGGCCAGCGATTAC
TGCGCCTCGGTTGGCATCACCGCGGGAACTGGCGTCGTCACCGCCGTCACCAACGGTGCCACGACCGGCGGCGGCACTGT
GACCTTCCTGCTTACCCCGACCGCAGCTGCTGGCCGCCTGGAGTGGGAATGCACCGCTTCCGGCCAGGACAATGAAGCTC
AGATTCCTGCCGAGTGCCGTCAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA2 | Legionella pneumophila str. Paris |
49.286 |
99.291 |
0.489 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
48.571 |
99.291 |
0.482 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
40 |
100 |
0.468 |
| comP | Acinetobacter baylyi ADP1 |
40.789 |
100 |
0.44 |
| pilA/pilA1 | Eikenella corrodens VA1 |
38.961 |
100 |
0.426 |
| pilA | Pseudomonas aeruginosa PAK |
37.419 |
100 |
0.411 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
39.716 |
100 |
0.397 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
39.286 |
99.291 |
0.39 |
| pilA | Haemophilus influenzae 86-028NP |
40 |
95.745 |
0.383 |
| pilE | Neisseria gonorrhoeae MS11 |
33.121 |
100 |
0.369 |