Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   LC55x_RS18935 Genome accession   NZ_CP011130
Coordinates   4720100..4721509 (+) Length   469 a.a.
NCBI ID   WP_036104561.1    Uniprot ID   A0A108UCN7
Organism   Lysobacter capsici strain 55     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4715100..4726509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LC55x_RS18915 (LC55x_4251) - 4715354..4715710 (-) 357 WP_057922442.1 endonuclease domain-containing protein -
  LC55x_RS18920 (LC55x_4252) sucD 4716014..4716889 (-) 876 WP_036104545.1 succinate--CoA ligase subunit alpha -
  LC55x_RS18925 (LC55x_4253) sucC 4716902..4718068 (-) 1167 WP_057922443.1 ADP-forming succinate--CoA ligase subunit beta -
  LC55x_RS18930 (LC55x_4254) - 4718389..4720014 (+) 1626 WP_057922444.1 ATP-binding protein -
  LC55x_RS18935 (LC55x_4255) pilR 4720100..4721509 (+) 1410 WP_036104561.1 sigma-54 dependent transcriptional regulator Regulator
  LC55x_RS18940 (LC55x_4256) pilA2 4722060..4722485 (+) 426 WP_057922445.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  LC55x_RS28400 - 4722646..4723071 (+) 426 WP_057922446.1 pilin -
  LC55x_RS18950 (LC55x_4257) pilB 4723256..4724983 (+) 1728 WP_057922447.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LC55x_RS18955 (LC55x_4258) pilC 4724987..4726258 (+) 1272 WP_057922448.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 50831.29 Da        Isoelectric Point: 6.8485

>NTDB_id=142619 LC55x_RS18935 WP_036104561.1 4720100..4721509(+) (pilR) [Lysobacter capsici strain 55]
MAETRSALVVDDERDIRELLVMTLGRMGLRCDTASGLGEARSQLLRNSYDLCLTDMRLPDGSGMDLIAEISQKYPNTPVA
MITAFGNVEAAVDALKAGAFDFVAKPVDLAVLRDLVRHALELNDTRRSASEAVGSRLYGESPAMIKLRQTIGKVARSQAP
VYIAGESGVGKELVARTIHSEGGRADGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAADGGTLFLDEVAE
LPLPMQVKLLRAIQEKSIRPVGAQAELVVDVRILSATHKDLAALVADGRFRQDLYYRINVIELRVPPLRERLDDLPGLAS
KILHRLAGNQGRPVPRLGEDALEALRAYGFPGNVRELENILERALALAEGEVLNASDLRLPRLSTQPPPLPAHAVQAGNP
SPQPGAVDPRTLNPRDTATSALPSYIEEIERAAIQQALQENRYNKTRTAAALGITFRALRYKLKKLGID

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=142619 LC55x_RS18935 WP_036104561.1 4720100..4721509(+) (pilR) [Lysobacter capsici strain 55]
ATGGCTGAAACACGTAGTGCATTGGTAGTCGACGACGAGCGCGATATTCGCGAGCTGCTCGTCATGACCTTGGGCCGGAT
GGGCCTGCGTTGCGACACCGCGTCGGGCCTCGGCGAGGCTCGCAGCCAGCTGCTGCGCAACAGTTACGACTTGTGCCTGA
CCGACATGCGCCTGCCCGACGGCTCGGGCATGGACCTGATCGCCGAGATCAGCCAGAAGTATCCGAACACTCCGGTAGCG
ATGATCACCGCCTTCGGCAACGTCGAAGCCGCGGTCGACGCGCTCAAGGCCGGCGCCTTCGATTTCGTCGCCAAACCCGT
CGACCTGGCGGTGCTGCGCGATCTGGTGCGGCACGCGCTCGAACTCAACGACACCCGCCGCAGCGCCAGCGAAGCGGTGG
GTTCGCGCCTGTACGGCGAGTCGCCGGCGATGATCAAGTTGCGCCAGACCATCGGCAAGGTCGCGCGCAGCCAGGCCCCG
GTGTACATCGCCGGCGAGTCCGGCGTCGGCAAGGAACTGGTCGCGCGCACCATTCATTCCGAAGGCGGCCGCGCCGACGG
TCCGTTCGTGCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCT
TCACCGGCGCCCACGCCGACAAGCCCGGCCTGTTCCAGGCCGCCGACGGCGGCACCTTGTTCCTCGACGAAGTCGCCGAG
CTGCCGCTGCCGATGCAAGTCAAGCTGCTGCGCGCGATCCAGGAAAAGTCGATCCGCCCGGTCGGCGCGCAAGCCGAACT
GGTGGTCGACGTGCGCATCCTCTCGGCGACCCACAAGGACCTCGCCGCGCTGGTCGCCGACGGCCGCTTCCGTCAGGACC
TTTACTACCGCATCAACGTCATCGAGCTGCGCGTGCCGCCGTTGCGCGAACGGCTCGACGACCTGCCCGGCCTGGCCTCG
AAGATCCTGCACCGGCTCGCCGGCAACCAGGGCCGGCCGGTACCGCGACTGGGCGAGGACGCGCTCGAAGCCCTGCGCGC
CTATGGCTTCCCGGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAGGCGAAGTCCTCA
ACGCCAGCGACCTGCGCCTGCCGCGCCTGTCGACCCAGCCGCCGCCGTTGCCGGCCCACGCGGTCCAGGCCGGCAACCCA
TCGCCGCAGCCCGGCGCCGTCGACCCGCGCACCCTCAACCCGCGCGACACCGCGACCAGCGCCCTGCCCTCGTACATCGA
GGAAATCGAGCGCGCCGCGATCCAGCAGGCGCTGCAGGAAAACCGCTACAACAAGACCCGCACCGCCGCGGCCCTGGGCA
TCACCTTCCGCGCGCTGCGCTACAAGCTCAAGAAGCTCGGGATCGATTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(138-303)

Bacterial regulatory protein, Fis family (HTH_8)

(426-466)

Response regulator receiver domain (Response_reg)

(8-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A108UCN7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.741

99.574

0.625
  pilR Acinetobacter baumannii strain A118

48.117

100

0.49

Multiple sequence alignment