Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LC55x_RS18955 Genome accession   NZ_CP011130
Coordinates   4724987..4726258 (+) Length   423 a.a.
NCBI ID   WP_057922448.1    Uniprot ID   -
Organism   Lysobacter capsici strain 55     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4719987..4731258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LC55x_RS18935 (LC55x_4255) pilR 4720100..4721509 (+) 1410 WP_036104561.1 sigma-54 dependent transcriptional regulator Regulator
  LC55x_RS18940 (LC55x_4256) pilA2 4722060..4722485 (+) 426 WP_057922445.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  LC55x_RS28400 - 4722646..4723071 (+) 426 WP_057922446.1 pilin -
  LC55x_RS18950 (LC55x_4257) pilB 4723256..4724983 (+) 1728 WP_057922447.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LC55x_RS18955 (LC55x_4258) pilC 4724987..4726258 (+) 1272 WP_057922448.1 type II secretion system F family protein Machinery gene
  LC55x_RS18960 (LC55x_4259) - 4726280..4727167 (+) 888 WP_036104586.1 A24 family peptidase -
  LC55x_RS18965 (LC55x_4260) coaE 4727171..4727791 (+) 621 WP_057922449.1 dephospho-CoA kinase -
  LC55x_RS18970 (LC55x_4261) - 4727942..4728916 (-) 975 WP_057922450.1 Nudix family hydrolase -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 45851.21 Da        Isoelectric Point: 10.4126

>NTDB_id=142622 LC55x_RS18955 WP_057922448.1 4724987..4726258(+) (pilC) [Lysobacter capsici strain 55]
MSASRSAARAATKQPQTAVRRANPLEVFVWQGTDKRGIKMKGEQAAKNANMLRAELRRQGISPTVVKPKGKPFFGASGSR
ITPGEIAIFSRQIATMIKSGVPIVTSLEIIGEGHKNPRMKKLLNTVRADLESGLSLHEAMSKHPVQFDELYRNLVKAGES
AGVLETVLDTVASYKENIETLKGKIKKALFYPATVVAVAILVSAILLIFVVPQFQATFKSFGADLPAFTLMVIGMSDFMI
KWWWAVLALVIGAGVAFIMAKNRSPAFAHFLDRAMLKIPVVGQILHNAAIARFARTLAVTFRAGVPLVEALDTVAGATGN
VVYEKAVNRIKDDVSVGYQVNMAMKQVNLFPHMVVQMTAIGEEAGALDTMLIKVAEFYEQEVNNAVDALSSLLEPLIMVI
LGVIVGGMVIAMYLPIFKLAATI

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=142622 LC55x_RS18955 WP_057922448.1 4724987..4726258(+) (pilC) [Lysobacter capsici strain 55]
ATGTCCGCGTCCCGATCCGCTGCCCGCGCAGCCACCAAACAGCCCCAGACCGCTGTCCGCCGAGCCAATCCCTTGGAGGT
ATTCGTCTGGCAAGGCACCGACAAGCGCGGCATCAAGATGAAGGGCGAGCAGGCGGCCAAAAACGCCAATATGCTGCGCG
CCGAACTGCGTCGCCAGGGCATCTCACCGACCGTGGTCAAGCCCAAGGGCAAGCCGTTCTTCGGCGCCTCCGGCAGCCGC
ATTACACCAGGTGAGATCGCCATCTTCAGTCGCCAGATCGCCACGATGATCAAATCTGGCGTGCCGATCGTGACCTCGCT
GGAAATCATCGGCGAAGGACACAAGAACCCGCGCATGAAGAAGCTCCTGAACACGGTTCGTGCCGATCTGGAAAGCGGCT
TGTCCTTGCACGAGGCCATGTCCAAGCACCCAGTCCAGTTCGATGAGCTCTACCGCAACCTAGTCAAGGCCGGCGAATCG
GCCGGTGTGCTCGAGACCGTGCTCGACACGGTCGCCAGCTACAAGGAAAATATCGAAACCCTCAAGGGCAAGATCAAGAA
GGCGCTGTTCTACCCGGCCACGGTCGTGGCCGTGGCGATCCTGGTCAGCGCCATCCTGCTGATCTTCGTGGTGCCGCAGT
TCCAGGCCACCTTCAAGAGCTTCGGCGCCGATCTGCCGGCCTTCACCTTGATGGTGATCGGCATGAGCGACTTTATGATC
AAGTGGTGGTGGGCGGTGCTGGCGCTGGTGATCGGCGCAGGCGTCGCCTTCATCATGGCCAAGAACCGCTCGCCCGCCTT
CGCCCACTTCCTCGACCGGGCGATGCTCAAGATCCCGGTGGTCGGGCAGATCCTACACAACGCGGCGATCGCCCGCTTCG
CCCGCACCCTGGCGGTGACCTTCCGCGCCGGCGTGCCGCTGGTTGAGGCGTTGGACACCGTGGCTGGCGCGACCGGCAAC
GTGGTCTACGAAAAGGCCGTCAACCGCATCAAGGACGACGTCTCGGTCGGTTACCAGGTCAACATGGCGATGAAACAGGT
CAACCTGTTCCCGCACATGGTGGTGCAGATGACCGCGATCGGCGAAGAAGCCGGCGCGCTCGACACCATGCTGATCAAGG
TCGCCGAGTTCTACGAGCAGGAAGTCAACAACGCGGTCGATGCGCTGTCGAGCCTGCTGGAGCCGCTGATCATGGTCATC
CTCGGCGTGATCGTCGGCGGCATGGTCATCGCCATGTACCTGCCGATCTTCAAACTTGCTGCGACCATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(89-212)

Type II secretion system (T2SS), protein F (T2SSF)

(293-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

55.198

95.508

0.527
  pilC Pseudomonas stutzeri DSM 10701

56.171

93.853

0.527
  pilC Acinetobacter baylyi ADP1

50.98

96.454

0.492
  pilC Acinetobacter baumannii D1279779

50.369

96.217

0.485
  pilG Neisseria gonorrhoeae MS11

43

94.563

0.407
  pilG Neisseria meningitidis 44/76-A

42.75

94.563

0.404
  pilC Vibrio campbellii strain DS40M4

41.045

95.035

0.39
  pilC Vibrio cholerae strain A1552

40.099

95.508

0.383
  pilC Thermus thermophilus HB27

36.73

99.764

0.366

Multiple sequence alignment