Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   AMD33_RS09540 Genome accession   NZ_CP012588
Coordinates   1808713..1809210 (+) Length   165 a.a.
NCBI ID   WP_002949220.1    Uniprot ID   Q5M6C4
Organism   Streptococcus thermophilus strain MN-BM-A01     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1803713..1814210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMD33_RS09520 (AMD33_09490) - 1804576..1805390 (-) 815 Protein_1790 ISL3 family transposase -
  AMD33_RS09525 (AMD33_09495) - 1805638..1805964 (+) 327 WP_014607875.1 M20/M25/M40 family metallo-hydrolase -
  AMD33_RS09530 (AMD33_09500) - 1806046..1807236 (+) 1191 WP_011680651.1 SAM-dependent methyltransferase -
  AMD33_RS09535 (AMD33_09505) - 1807495..1807959 (-) 465 Protein_1793 transposase family protein -
  AMD33_RS10780 - 1808317..1808421 (+) 105 Protein_1794 IS200/IS605 family transposase -
  AMD33_RS09540 (AMD33_09510) comX 1808713..1809210 (+) 498 WP_002949220.1 sigma factor Regulator
  AMD33_RS09545 (AMD33_09515) - 1809310..1810152 (-) 843 WP_011225338.1 mechanosensitive ion channel family protein -
  AMD33_RS09550 (AMD33_09520) tig 1810293..1811576 (+) 1284 WP_011680653.1 trigger factor -
  AMD33_RS09555 (AMD33_09525) rpoE 1811734..1812309 (+) 576 WP_002949228.1 DNA-directed RNA polymerase subunit delta -
  AMD33_RS09560 (AMD33_09530) - 1812560..1814164 (+) 1605 WP_002949230.1 CTP synthase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 20160.12 Da        Isoelectric Point: 5.2073

>NTDB_id=134850 AMD33_RS09540 WP_002949220.1 1808713..1809210(+) (comX) [Streptococcus thermophilus strain MN-BM-A01]
MEQEVFVKAYEKVRPIVLKAFRQYFIQLWDQADMEQEAMMTLYQLLKKFPDLEKDDDKLRRYFKTKFRNRLNDEVRRQES
VKRQANRQCYVEISDIAFCIPNKELDMVDRLAYDEQLNAFREQLSSEDSLKLDRLLGGECFRGRKKMIRELRFWMVDFDP
CNEED

Nucleotide


Download         Length: 498 bp        

>NTDB_id=134850 AMD33_RS09540 WP_002949220.1 1808713..1809210(+) (comX) [Streptococcus thermophilus strain MN-BM-A01]
ATGGAACAAGAAGTTTTTGTTAAGGCATATGAAAAGGTAAGGCCAATTGTACTTAAGGCTTTTAGGCAATACTTTATTCA
GCTTTGGGATCAAGCTGACATGGAGCAAGAGGCGATGATGACTTTGTATCAGCTTTTAAAAAAGTTTCCTGATTTAGAGA
AAGATGATGATAAGTTACGTCGTTACTTTAAAACTAAGTTTAGGAATCGACTTAATGATGAAGTGAGGCGGCAGGAGTCA
GTAAAACGTCAAGCTAATAGACAGTGCTATGTTGAAATTTCAGATATTGCCTTTTGTATTCCCAATAAGGAGCTAGATAT
GGTTGATAGACTTGCTTATGATGAACAGCTTAATGCTTTTCGTGAGCAGTTATCATCGGAAGATTCTCTTAAGTTGGATC
GATTGTTGGGTGGTGAATGCTTTAGGGGAAGGAAAAAGATGATACGAGAGTTAAGATTTTGGATGGTTGACTTTGATCCA
TGTAATGAAGAAGACTGA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(10-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M6C4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.