Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   CPAST_RS13945 Genome accession   NZ_CP009267
Coordinates   3075005..3075340 (-) Length   111 a.a.
NCBI ID   WP_003443117.1    Uniprot ID   A0A0H3JAY7
Organism   Clostridium pasteurianum DSM 525 = ATCC 6013     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3070005..3080340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPAST_RS13930 (CPAST_c28660) - 3070366..3071136 (-) 771 WP_003443112.1 LytTR family DNA-binding domain-containing protein -
  CPAST_RS13935 (CPAST_c28670) - 3071129..3072814 (-) 1686 WP_003443114.1 LytS/YhcK type 5TM receptor domain-containing protein -
  CPAST_RS13940 (CPAST_c28680) - 3073057..3074883 (+) 1827 WP_003443116.1 carbon starvation protein A -
  CPAST_RS13945 (CPAST_c28690) ssbA 3075005..3075340 (-) 336 WP_003443117.1 single-stranded DNA-binding protein Machinery gene
  CPAST_RS13950 (CPAST_c28700) - 3075487..3076338 (-) 852 WP_034829925.1 YitT family protein -
  CPAST_RS13955 (CPAST_c28710) tsaD 3076365..3077387 (-) 1023 WP_003443119.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  CPAST_RS13960 (CPAST_c28720) - 3077389..3078102 (-) 714 WP_003443120.1 nuclease-related domain-containing protein -
  CPAST_RS13965 (CPAST_c28730) - 3078430..3079056 (+) 627 WP_003443121.1 RusA family crossover junction endodeoxyribonuclease -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12602.54 Da        Isoelectric Point: 9.5394

>NTDB_id=127895 CPAST_RS13945 WP_003443117.1 3075005..3075340(-) (ssbA) [Clostridium pasteurianum DSM 525 = ATCC 6013]
MNKVLLVGRLVRDPELKHIESNGREVCNFTVAVNRNFINAKGEREADFVPVVVWGKTAELVCNYMKKGRLLSISGRLQIR
SYETKDGNRKYVTEVIGEEVLFLDSKKESAS

Nucleotide


Download         Length: 336 bp        

>NTDB_id=127895 CPAST_RS13945 WP_003443117.1 3075005..3075340(-) (ssbA) [Clostridium pasteurianum DSM 525 = ATCC 6013]
ATGAATAAAGTTTTATTGGTAGGAAGATTGGTAAGGGATCCTGAATTAAAACATATCGAATCAAATGGAAGAGAAGTATG
CAATTTTACAGTGGCAGTAAACAGAAACTTTATAAATGCAAAAGGGGAGAGAGAAGCTGACTTTGTTCCAGTAGTGGTTT
GGGGTAAGACCGCAGAACTTGTATGCAATTATATGAAAAAGGGAAGACTTCTTAGTATTAGCGGAAGACTCCAGATAAGA
AGTTATGAAACAAAAGATGGAAATAGAAAATATGTAACAGAAGTAATAGGAGAAGAAGTACTATTTTTAGATTCTAAAAA
GGAAAGTGCAAGTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3JAY7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.774

95.495

0.514
  ssbB Bacillus subtilis subsp. subtilis str. 168

50.943

95.495

0.486
  ssb Latilactobacillus sakei subsp. sakei 23K

50

95.495

0.477
  ssbB Streptococcus sobrinus strain NIDR 6715-7

46.789

98.198

0.459
  ssbB/cilA Streptococcus mitis NCTC 12261

45.872

98.198

0.45
  ssbB/cilA Streptococcus pneumoniae TIGR4

45.872

98.198

0.45
  ssbA Streptococcus mutans UA159

45.872

98.198

0.45
  ssbB/cilA Streptococcus pneumoniae R6

44.954

98.198

0.441
  ssbB/cilA Streptococcus pneumoniae Rx1

44.954

98.198

0.441
  ssbB/cilA Streptococcus pneumoniae D39

44.954

98.198

0.441
  ssbB/cilA Streptococcus mitis SK321

44.954

98.198

0.441
  ssbB Lactococcus lactis subsp. cremoris KW2

43.396

95.495

0.414
  ssb Neisseria meningitidis MC58

35.714

100

0.36
  ssb Neisseria gonorrhoeae MS11

35.714

100

0.36

Multiple sequence alignment