Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   FD63_RS19715 Genome accession   NZ_CP008714
Coordinates   3374452..3374910 (-) Length   152 a.a.
NCBI ID   WP_047325192.1    Uniprot ID   -
Organism   Xanthomonas translucens pv. undulosa strain Xtu 4699     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3369452..3379910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FD63_RS14025 (FD63_14535) pilR 3369601..3370989 (+) 1389 WP_003466378.1 sigma-54 dependent transcriptional regulator Regulator
  FD63_RS14030 (FD63_14540) - 3371178..3371360 (+) 183 WP_003466380.1 YhfG family protein -
  FD63_RS14035 (FD63_14545) - 3371357..3371974 (+) 618 WP_047325190.1 Fic family protein -
  FD63_RS14040 (FD63_14550) pilB 3371984..3373720 (-) 1737 WP_047325191.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FD63_RS19715 pilE 3374452..3374910 (-) 459 WP_047325192.1 pilin Machinery gene
  FD63_RS14050 (FD63_14555) pilC 3375296..3376555 (+) 1260 WP_003466392.1 type II secretion system F family protein Machinery gene
  FD63_RS14055 (FD63_14560) - 3376562..3377425 (+) 864 WP_047325193.1 A24 family peptidase -
  FD63_RS14060 (FD63_14565) coaE 3377439..3378059 (+) 621 WP_047325194.1 dephospho-CoA kinase -
  FD63_RS14065 (FD63_14570) - 3378182..3379516 (-) 1335 WP_003477107.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 15318.54 Da        Isoelectric Point: 8.4798

>NTDB_id=123852 FD63_RS19715 WP_047325192.1 3374452..3374910(-) (pilE) [Xanthomonas translucens pv. undulosa strain Xtu 4699]
MKKQQGFTLIELMIVVAIIAILAAIAIPAYQDYIARAQMSEALTLASGQKVGVSEVFSNKGTCPANGSDGFAADTDINGK
YVQKVTVGGTAAASGGCTIVATMKSTGVSTGVQGATLTLTLSNADKGSNVWTCTSSAKQKYLPTACTGGTGA

Nucleotide


Download         Length: 459 bp        

>NTDB_id=123852 FD63_RS19715 WP_047325192.1 3374452..3374910(-) (pilE) [Xanthomonas translucens pv. undulosa strain Xtu 4699]
ATGAAGAAGCAACAGGGCTTTACGCTGATCGAACTGATGATCGTGGTCGCGATCATCGCCATCCTGGCCGCCATTGCAAT
CCCGGCTTATCAGGATTATATCGCTCGTGCACAAATGTCCGAGGCGCTGACTTTGGCGAGCGGCCAGAAGGTCGGTGTCT
CTGAGGTTTTTTCTAATAAGGGAACTTGCCCGGCCAATGGCAGCGACGGATTCGCCGCTGACACTGACATCAATGGCAAG
TATGTACAAAAGGTTACGGTGGGTGGTACTGCTGCAGCTTCCGGTGGGTGCACGATTGTTGCAACCATGAAGAGCACCGG
CGTTTCCACTGGTGTTCAGGGTGCAACTCTCACCTTGACCCTTTCGAACGCTGACAAGGGTTCTAATGTCTGGACATGCA
CGTCCAGCGCTAAGCAAAAATATCTGCCGACGGCTTGTACCGGCGGTACCGGCGCTTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(35-147)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

44.91

100

0.493
  pilE Neisseria gonorrhoeae MS11

45.062

100

0.48
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

40.881

100

0.428
  comP Acinetobacter baylyi ADP1

42.763

100

0.428
  pilA Acinetobacter nosocomialis M2

50.82

80.263

0.408
  pilA2 Legionella pneumophila strain ERS1305867

42.466

96.053

0.408
  pilA Pseudomonas aeruginosa PAK

39.49

100

0.408
  pilA Acinetobacter baumannii strain A118

40.132

100

0.401
  pilA2 Legionella pneumophila str. Paris

42.069

95.395

0.401
  pilA Ralstonia pseudosolanacearum GMI1000

40.397

99.342

0.401
  pilA/pilA1 Eikenella corrodens VA1

35.22

100

0.368
  pilA/pilAI Pseudomonas stutzeri DSM 10701

38.356

96.053

0.368

Multiple sequence alignment