Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   B6116_RS05975 Genome accession   NZ_CP007667
Coordinates   1160859..1161989 (+) Length   376 a.a.
NCBI ID   WP_002214012.1    Uniprot ID   X5EQV8
Organism   Neisseria meningitidis strain B6116/77     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1155859..1166989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6116_RS15425 - 1156689..1156795 (-) 107 Protein_1127 IS5/IS1182 family transposase -
  B6116_RS05960 (B6116_01121) lepB 1156893..1157912 (-) 1020 WP_002217606.1 signal peptidase I -
  B6116_RS05965 (B6116_01122) lepA 1158055..1159848 (-) 1794 WP_002226499.1 translation elongation factor 4 -
  B6116_RS05970 (B6116_01123) - 1159990..1160691 (-) 702 WP_002226498.1 5'-methylthioadenosine/adenosylhomocysteine nucleosidase -
  B6116_RS05975 (B6116_01124) pilU 1160859..1161989 (+) 1131 WP_002214012.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  B6116_RS05980 (B6116_01125) - 1162023..1163000 (+) 978 WP_002226497.1 DNA polymerase III subunit delta' -
  B6116_RS05985 (B6116_01126) - 1163004..1163354 (+) 351 WP_002221202.1 PilZ domain-containing protein -
  B6116_RS05990 (B6116_01127) - 1163359..1164138 (+) 780 WP_002221201.1 TatD family hydrolase -
  B6116_RS05995 (B6116_01128) - 1164164..1164379 (+) 216 WP_002219531.1 DUF333 domain-containing protein -
  B6116_RS06000 (B6116_01129) grxD 1164480..1164791 (+) 312 WP_002214004.1 Grx4 family monothiol glutaredoxin -
  B6116_RS06010 (B6116_01131) upp 1164897..1165523 (+) 627 WP_002214002.1 uracil phosphoribosyltransferase -
  B6116_RS06015 (B6116_01132) - 1165546..1165866 (+) 321 WP_002214001.1 DUF2322 family protein -
  B6116_RS06020 (B6116_01133) - 1166269..1166691 (+) 423 WP_002226495.1 protein Gly1ORF1 -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 42215.36 Da        Isoelectric Point: 6.4333

>NTDB_id=122198 B6116_RS05975 WP_002214012.1 1160859..1161989(+) (pilU) [Neisseria meningitidis strain B6116/77]
MFTDENMTAKEELFAWLRHMNKNKGSDLFVTTHFPPAMKLDGKITRITDEPLTAEKCMEIAFSIMSAKQAEEFSSTNECN
FAISLPDTSRFRVNAMIQRGATALVFRAITSKIPKFESLNLPPVLKDVALKKRGLVIFVGGTGSGKSTSLASLIDYRNEN
SFGHIITIEDPIEFVHEHKNCIITQREVGVDTENWMAALKNTLRQAPDVILIGEIRDRETMDYAIAFAETGHLCMATLHA
NSTNQALDRIINFFPEERREQLLTDLSLNLQAFISQRLVPRDGGKGRVAAVEVLLNSPLISELIHNGNIHEIKEVMKKST
TLGMQTFDQHLYQLYEKGDISLQEALKNADSAHDLRLAVQLRSRRAQSSSPDLELL

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=122198 B6116_RS05975 WP_002214012.1 1160859..1161989(+) (pilU) [Neisseria meningitidis strain B6116/77]
ATGTTTACCGATGAAAATATGACCGCAAAGGAAGAACTGTTCGCATGGCTGCGCCATATGAACAAAAACAAAGGTTCCGA
CCTGTTTGTGACGACCCATTTCCCGCCCGCGATGAAGCTGGACGGCAAAATCACCCGCATCACGGACGAACCGCTGACGG
CGGAAAAATGTATGGAAATCGCCTTTTCGATTATGAGTGCGAAGCAGGCGGAAGAATTTTCATCGACCAACGAGTGCAAC
TTCGCCATCAGCCTGCCGGACACCAGCCGCTTCCGCGTCAATGCGATGATACAGCGCGGCGCGACGGCGTTGGTATTCCG
TGCGATTACCAGCAAGATTCCCAAGTTTGAAAGCCTCAACCTGCCGCCGGTCTTGAAGGATGTCGCGCTGAAAAAACGCG
GGCTGGTTATTTTTGTCGGCGGCACCGGCTCGGGCAAATCGACTTCGCTTGCCTCGCTTATCGATTACCGCAATGAAAAT
TCGTTCGGACACATTATCACCATCGAAGACCCGATCGAGTTTGTCCACGAACACAAAAACTGCATCATCACCCAGCGAGA
GGTCGGCGTGGATACGGAAAACTGGATGGCGGCGTTGAAAAACACGCTGCGTCAGGCGCCCGATGTCATCCTTATCGGCG
AAATCCGCGACCGCGAAACAATGGACTACGCCATTGCCTTTGCCGAAACGGGGCATTTGTGTATGGCGACGCTGCACGCC
AACAGCACCAATCAGGCACTCGACCGCATCATCAACTTTTTCCCCGAGGAGCGGCGCGAACAATTGCTGACGGATTTGTC
GCTCAACCTTCAGGCGTTTATTTCGCAACGCCTCGTTCCGCGAGACGGCGGCAAGGGCAGGGTGGCGGCAGTCGAGGTGC
TGCTCAATTCGCCCCTGATTTCGGAGTTGATTCACAACGGCAACATCCATGAAATCAAAGAAGTGATGAAAAAATCCACT
ACCCTGGGTATGCAGACCTTCGATCAACACCTTTACCAATTGTATGAAAAAGGCGATATTTCCCTGCAAGAAGCATTGAA
AAATGCCGATTCCGCACACGATTTGCGTTTGGCGGTACAGTTGCGCAGCCGCCGCGCGCAAAGTTCCAGCCCCGATTTGG
AACTGCTCTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(89-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB X5EQV8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

59.375

93.617

0.556
  pilU Acinetobacter baylyi ADP1

57.434

91.223

0.524
  pilU Vibrio cholerae strain A1552

54.366

94.415

0.513
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.343

93.883

0.407
  pilT Legionella pneumophila strain Lp02

43.827

86.17

0.378
  pilT Legionella pneumophila strain ERS1305867

43.827

86.17

0.378
  pilT Acinetobacter baylyi ADP1

42.727

87.766

0.375
  pilT Pseudomonas aeruginosa PAK

42.683

87.234

0.372
  pilT Acinetobacter nosocomialis M2

42.901

86.17

0.37
  pilT Acinetobacter baumannii D1279779

42.901

86.17

0.37
  pilT Acinetobacter baumannii strain A118

42.901

86.17

0.37
  pilT Neisseria meningitidis 8013

40.896

89.096

0.364
  pilT Pseudomonas stutzeri DSM 10701

41.768

87.234

0.364

Multiple sequence alignment