Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   NB068_RS03905 Genome accession   NZ_OW969598
Coordinates   782452..783582 (-) Length   376 a.a.
NCBI ID   WP_283255193.1    Uniprot ID   -
Organism   Neisseria sp. Marseille-Q6792     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 777452..788582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NB068_RS03865 - 777971..778393 (-) 423 WP_250314120.1 protein Gly1ORF1 -
  NB068_RS03870 - 778564..778881 (-) 318 WP_250314121.1 DUF2322 family protein -
  NB068_RS03875 upp 778904..779530 (-) 627 WP_250314122.1 uracil phosphoribosyltransferase -
  NB068_RS03880 grxD 779636..779947 (-) 312 WP_002241342.1 Grx4 family monothiol glutaredoxin -
  NB068_RS10255 - 780048..780276 (-) 229 Protein_755 DUF333 domain-containing protein -
  NB068_RS03890 - 780302..781081 (-) 780 WP_250314123.1 TatD family hydrolase -
  NB068_RS03895 - 781086..781436 (-) 351 WP_250314124.1 PilZ domain-containing protein -
  NB068_RS03900 - 781440..782417 (-) 978 WP_250314125.1 DNA polymerase III subunit delta' -
  NB068_RS03905 pilU 782452..783582 (-) 1131 WP_283255193.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  NB068_RS03910 - 783750..784451 (+) 702 WP_250314915.1 5'-methylthioadenosine/adenosylhomocysteine nucleosidase -
  NB068_RS03915 lepA 784594..786387 (+) 1794 WP_101053784.1 translation elongation factor 4 -
  NB068_RS03920 lepB 786530..787549 (+) 1020 WP_250314127.1 signal peptidase I -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 42229.34 Da        Isoelectric Point: 6.2887

>NTDB_id=1153537 NB068_RS03905 WP_283255193.1 782452..783582(-) (pilU) [Neisseria sp. Marseille-Q6792]
MFTDENMTAKDELFAWLRHMNKNKGSDLFVTTHFPPAMKLDGKITRITDEPLTAEKCMEIAFSIMSAKQAEEFSSTNECN
FAISLPDTSRFRVNAMIQRGATALVFRAITSKIPKFESLNLPPVLKDVALKKRGLVIFVGGTGSGKSTSLASLIDYRNEN
SFGHIITIEDPIEFVHEHKNCIITQREVGVDTENWMAALKNTLRQAPDVILIGEIRDRETMDYAIAFAETGHLCMATLHA
NSTNQALDRIINFFPEERREQLLTDLSLNLQAFISQRLVPRDGGKGRVAAVEVLLNSPLISELIHNGNIHEIKEVMKKST
TLGMQTFDQHLYQLYEKGEISLQDALKNADSAHDLRLAVQLRSRRAQSSDPDLELL

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=1153537 NB068_RS03905 WP_283255193.1 782452..783582(-) (pilU) [Neisseria sp. Marseille-Q6792]
ATGTTTACCGATGAAAATATGACTGCAAAAGACGAGTTGTTCGCATGGCTGCGCCATATGAACAAAAATAAAGGTTCCGA
CCTGTTTGTGACGACCCATTTCCCGCCCGCAATGAAGCTGGACGGCAAAATCACCCGCATCACGGACGAGCCGCTGACGG
CGGAAAAATGTATGGAAATCGCCTTTTCGATTATGAGTGCGAAGCAGGCGGAAGAATTTTCATCGACCAACGAGTGCAAC
TTCGCCATCAGCCTGCCGGACACCAGCCGCTTCCGCGTCAATGCGATGATACAGCGCGGAGCGACGGCGTTGGTATTCCG
CGCGATTACCAGCAAGATTCCTAAGTTTGAAAGCCTGAACCTGCCGCCGGTCTTGAAGGATGTCGCGCTGAAAAAACGCG
GGCTGGTTATTTTTGTCGGCGGCACCGGCTCGGGCAAATCGACTTCGCTTGCCTCGCTTATCGACTACCGCAATGAAAAT
TCGTTCGGACACATTATCACCATCGAAGACCCGATCGAGTTTGTCCACGAACACAAAAACTGCATCATTACCCAGCGCGA
GGTCGGCGTGGATACGGAAAACTGGATGGCGGCGTTGAAAAACACGCTGCGGCAGGCGCCGGATGTGATTCTGATCGGCG
AAATCCGCGACCGCGAAACCATGGATTACGCCATCGCCTTTGCCGAAACGGGGCATTTGTGTATGGCGACGCTGCACGCC
AACAGCACCAATCAGGCACTCGACCGCATCATCAACTTTTTCCCCGAGGAGCGGCGCGAACAATTGCTGACGGATTTGTC
GCTCAACCTTCAGGCGTTTATTTCGCAACGCCTCGTTCCGCGGGACGGCGGCAAGGGCAGGGTGGCGGCAGTCGAGGTGC
TGCTCAATTCGCCCCTGATTTCGGAGTTGATTCACAACGGCAACATCCATGAAATCAAAGAAGTGATGAAAAAATCCACT
ACCTTGGGTATGCAGACCTTCGACCAACACCTTTACCAATTGTATGAAAAAGGCGAGATTTCCTTGCAGGATGCCTTGAA
AAATGCCGATTCCGCACACGATTTGCGTTTGGCGGTGCAGTTGCGCAGCCGCCGCGCGCAAAGTTCCGACCCCGATTTGG
AACTGCTCTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(89-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

59.943

93.617

0.561
  pilU Acinetobacter baylyi ADP1

57.726

91.223

0.527
  pilU Vibrio cholerae strain A1552

54.648

94.415

0.516
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.343

93.883

0.407
  pilT Legionella pneumophila strain Lp02

43.827

86.17

0.378
  pilT Legionella pneumophila strain ERS1305867

43.827

86.17

0.378
  pilT Acinetobacter baylyi ADP1

42.727

87.766

0.375
  pilT Pseudomonas aeruginosa PAK

42.683

87.234

0.372
  pilT Acinetobacter nosocomialis M2

42.901

86.17

0.37
  pilT Acinetobacter baumannii D1279779

42.901

86.17

0.37
  pilT Acinetobacter baumannii strain A118

42.901

86.17

0.37
  pilT Neisseria meningitidis 8013

40.896

89.096

0.364
  pilT Pseudomonas stutzeri DSM 10701

41.768

87.234

0.364

Multiple sequence alignment