Detailed information NTG1141470

Bioinformatically predicted

Overview

• Name: comYC
• Type: Machinery gene
• Locus tag: DQN42_RS08375
• Genome accession: NZ_LS483436
• Coordinates: 1700492..1700809 (-)
• Length: 105 a.a.
• NCBI ID: WP_003075998.1
• Uniprot ID: A0AAE8G310
• Organism: Streptococcus intermedius strain NCTC11324
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1695492..1705809

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQN42_RS08345 (NCTC11324_01680)	-	1696821..1698020 (-)	1200	WP_003076127.1	acetate kinase	-
DQN42_RS08350 (NCTC11324_01681)	comYH	1698067..1699020 (-)	954	WP_003075742.1	class I SAM-dependent methyltransferase	Machinery gene
DQN42_RS08355 (NCTC11324_01682)	comGG	1699111..1699437 (-)	327	WP_014829817.1	competence type IV pilus minor pilin ComGG	-
DQN42_RS08360 (NCTC11324_01683)	comGF/cglF	1699418..1699855 (-)	438	WP_003073990.1	competence type IV pilus minor pilin ComGF	Machinery gene
DQN42_RS08365 (NCTC11324_01684)	comGE/cglE	1699839..1700132 (-)	294	WP_003073987.1	competence type IV pilus minor pilin ComGE	Machinery gene
DQN42_RS08370 (NCTC11324_01685)	comYD	1700104..1700532 (-)	429	WP_014829819.1	competence type IV pilus minor pilin ComGD	Machinery gene
DQN42_RS08375 (NCTC11324_01686)	comYC	1700492..1700809 (-)	318	WP_003075998.1	competence type IV pilus major pilin ComGC	Machinery gene
DQN42_RS08380 (NCTC11324_01687)	comYB	1700806..1701828 (-)	1023	WP_172634362.1	competence type IV pilus assembly protein ComGB	Machinery gene
DQN42_RS08385 (NCTC11324_01688)	comYA	1701770..1702711 (-)	942	WP_003073980.1	competence type IV pilus ATPase ComGA	Machinery gene
DQN42_RS08390 (NCTC11324_01689)	-	1702780..1703145 (-)	366	WP_003075933.1	DUF1033 family protein	-
DQN42_RS08395 (NCTC11324_01690)	glnA	1703367..1704713 (-)	1347	WP_003076201.1	type I glutamate--ammonia ligase	-
DQN42_RS08400 (NCTC11324_01691)	-	1704752..1705111 (-)	360	WP_003073972.1	MerR family transcriptional regulator	-
DQN42_RS08405 (NCTC11324_01692)	-	1705188..1705718 (-)	531	WP_003073971.1	aromatic acid exporter family protein	-

Sequence

Protein

• Length: 105 a.a.
• Molecular weight: 11666.77 Da
• Isoelectric Point: 10.1006

>NTDB_id=1141470 DQN42_RS08375 WP_003075998.1 1700492..1700809(-) (comYC) [Streptococcus intermedius strain NCTC11324]
MKKIKNLKVKAFTLVEMLVVLLIISVLMLLFVPNLTKQKEAVTEKGNAAVVKVVESQAELFEVNHSNEKATLSKLVTEGT
ITDKQAASYKAYYAKHTKETRSVAD

Nucleotide

• Length: 318 bp

>NTDB_id=1141470 DQN42_RS08375 WP_003075998.1 1700492..1700809(-) (comYC) [Streptococcus intermedius strain NCTC11324]
GTGAAAAAAATTAAAAATTTGAAGGTTAAAGCTTTTACTTTAGTGGAAATGTTGGTTGTGCTTTTAATCATTAGTGTTTT
AATGCTCTTATTTGTGCCGAATTTGACCAAGCAAAAGGAAGCAGTAACAGAAAAAGGAAATGCAGCTGTGGTCAAAGTTG
TAGAGAGCCAAGCGGAACTTTTCGAGGTCAATCATAGCAATGAAAAAGCAACGCTTTCAAAATTAGTCACTGAAGGCACG
ATTACAGATAAGCAGGCAGCGTCATATAAGGCTTACTATGCGAAACATACAAAAGAAACTCGTTCTGTTGCAGATTAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (8-30)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYC	Streptococcus gordonii str. Challis substr. CH1	73.333	100	0.733
comYC	Streptococcus mutans UA140	68.571	100	0.686
comYC	Streptococcus mutans UA159	68.571	100	0.686
comGC/cglC	Streptococcus mitis NCTC 12261	68.627	97.143	0.667
comGC/cglC	Streptococcus mitis SK321	68.627	97.143	0.667
comGC/cglC	Streptococcus pneumoniae Rx1	66.667	97.143	0.648
comGC/cglC	Streptococcus pneumoniae D39	66.667	97.143	0.648
comGC/cglC	Streptococcus pneumoniae TIGR4	66.667	97.143	0.648
comGC/cglC	Streptococcus pneumoniae R6	66.667	97.143	0.648
comGC	Lactococcus lactis subsp. cremoris KW2	54.808	99.048	0.543
comYC	Streptococcus suis isolate S10	64.045	84.762	0.543