Detailed information NTG1141467

Bioinformatically predicted

Overview

• Name: comGF/cglF
• Type: Machinery gene
• Locus tag: DQN42_RS08360
• Genome accession: NZ_LS483436
• Coordinates: 1699418..1699855 (-)
• Length: 145 a.a.
• NCBI ID: WP_003073990.1
• Uniprot ID: -
• Organism: Streptococcus intermedius strain NCTC11324
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1694418..1704855

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQN42_RS08340 (NCTC11324_01679)	glmS	1694625..1696439 (-)	1815	WP_003076077.1	glutamine--fructose-6-phosphate transaminase (isomerizing)	-
DQN42_RS08345 (NCTC11324_01680)	-	1696821..1698020 (-)	1200	WP_003076127.1	acetate kinase	-
DQN42_RS08350 (NCTC11324_01681)	comYH	1698067..1699020 (-)	954	WP_003075742.1	class I SAM-dependent methyltransferase	Machinery gene
DQN42_RS08355 (NCTC11324_01682)	comGG	1699111..1699437 (-)	327	WP_014829817.1	competence type IV pilus minor pilin ComGG	-
DQN42_RS08360 (NCTC11324_01683)	comGF/cglF	1699418..1699855 (-)	438	WP_003073990.1	competence type IV pilus minor pilin ComGF	Machinery gene
DQN42_RS08365 (NCTC11324_01684)	comGE/cglE	1699839..1700132 (-)	294	WP_003073987.1	competence type IV pilus minor pilin ComGE	Machinery gene
DQN42_RS08370 (NCTC11324_01685)	comYD	1700104..1700532 (-)	429	WP_014829819.1	competence type IV pilus minor pilin ComGD	Machinery gene
DQN42_RS08375 (NCTC11324_01686)	comYC	1700492..1700809 (-)	318	WP_003075998.1	competence type IV pilus major pilin ComGC	Machinery gene
DQN42_RS08380 (NCTC11324_01687)	comYB	1700806..1701828 (-)	1023	WP_172634362.1	competence type IV pilus assembly protein ComGB	Machinery gene
DQN42_RS08385 (NCTC11324_01688)	comYA	1701770..1702711 (-)	942	WP_003073980.1	competence type IV pilus ATPase ComGA	Machinery gene
DQN42_RS08390 (NCTC11324_01689)	-	1702780..1703145 (-)	366	WP_003075933.1	DUF1033 family protein	-
DQN42_RS08395 (NCTC11324_01690)	glnA	1703367..1704713 (-)	1347	WP_003076201.1	type I glutamate--ammonia ligase	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16858.51 Da
• Isoelectric Point: 10.2149

>NTDB_id=1141467 DQN42_RS08360 WP_003073990.1 1699418..1699855(-) (comGF/cglF) [Streptococcus intermedius strain NCTC11324]
MFKANKVKAFTLLEALIALFVLSGSVLLFQSMTRLLASEVQTRQHSEQREWLLFADQLEVELTRSSFEKVENNRLYMKQD
GKVIAFGKASGQDFRKTNANGKGYQPMVYDVKKAEISQENELVRIRLLFKRGLEREFIYRVETKS

Nucleotide

• Length: 438 bp

>NTDB_id=1141467 DQN42_RS08360 WP_003073990.1 1699418..1699855(-) (comGF/cglF) [Streptococcus intermedius strain NCTC11324]
GTGTTCAAAGCAAATAAAGTAAAAGCTTTTACACTTTTAGAGGCTCTGATTGCCCTATTCGTACTCAGTGGAAGTGTGTT
GCTATTTCAATCTATGACGCGTCTTCTGGCTTCTGAAGTCCAAACTCGACAACACAGTGAACAGCGAGAATGGCTTTTGT
TTGCCGATCAACTAGAAGTGGAGTTGACGCGTTCTTCATTTGAAAAAGTGGAGAATAATCGTTTATACATGAAGCAAGAT
GGTAAGGTAATTGCATTTGGAAAAGCAAGTGGACAAGATTTCAGGAAAACCAATGCGAATGGGAAAGGTTATCAGCCCAT
GGTTTATGATGTGAAAAAAGCAGAAATTTCACAGGAAAATGAGCTGGTTCGTATTCGATTACTGTTTAAGAGAGGATTGG
AAAGGGAATTCATCTATCGTGTGGAAACAAAAAGTTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (38-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGF/cglF	Streptococcus pneumoniae R6	68.571	96.552	0.662
comGF/cglF	Streptococcus pneumoniae TIGR4	68.571	96.552	0.662
comGF/cglF	Streptococcus pneumoniae Rx1	68.571	96.552	0.662
comGF/cglF	Streptococcus pneumoniae D39	68.571	96.552	0.662
comGF/cglF	Streptococcus mitis NCTC 12261	67.857	96.552	0.655
comGF/cglF	Streptococcus mitis SK321	67.857	96.552	0.655
comYF	Streptococcus mutans UA159	41.135	97.241	0.4
comYF	Streptococcus mutans UA140	41.135	97.241	0.4
comGF	Lactococcus lactis subsp. cremoris KW2	42.963	93.103	0.4