Detailed information NTG1141469

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: DQN42_RS08370
• Genome accession: NZ_LS483436
• Coordinates: 1700104..1700532 (-)
• Length: 142 a.a.
• NCBI ID: WP_014829819.1
• Uniprot ID: -
• Organism: Streptococcus intermedius strain NCTC11324
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1695104..1705532

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQN42_RS08345 (NCTC11324_01680)	-	1696821..1698020 (-)	1200	WP_003076127.1	acetate kinase	-
DQN42_RS08350 (NCTC11324_01681)	comYH	1698067..1699020 (-)	954	WP_003075742.1	class I SAM-dependent methyltransferase	Machinery gene
DQN42_RS08355 (NCTC11324_01682)	comGG	1699111..1699437 (-)	327	WP_014829817.1	competence type IV pilus minor pilin ComGG	-
DQN42_RS08360 (NCTC11324_01683)	comGF/cglF	1699418..1699855 (-)	438	WP_003073990.1	competence type IV pilus minor pilin ComGF	Machinery gene
DQN42_RS08365 (NCTC11324_01684)	comGE/cglE	1699839..1700132 (-)	294	WP_003073987.1	competence type IV pilus minor pilin ComGE	Machinery gene
DQN42_RS08370 (NCTC11324_01685)	comYD	1700104..1700532 (-)	429	WP_014829819.1	competence type IV pilus minor pilin ComGD	Machinery gene
DQN42_RS08375 (NCTC11324_01686)	comYC	1700492..1700809 (-)	318	WP_003075998.1	competence type IV pilus major pilin ComGC	Machinery gene
DQN42_RS08380 (NCTC11324_01687)	comYB	1700806..1701828 (-)	1023	WP_172634362.1	competence type IV pilus assembly protein ComGB	Machinery gene
DQN42_RS08385 (NCTC11324_01688)	comYA	1701770..1702711 (-)	942	WP_003073980.1	competence type IV pilus ATPase ComGA	Machinery gene
DQN42_RS08390 (NCTC11324_01689)	-	1702780..1703145 (-)	366	WP_003075933.1	DUF1033 family protein	-
DQN42_RS08395 (NCTC11324_01690)	glnA	1703367..1704713 (-)	1347	WP_003076201.1	type I glutamate--ammonia ligase	-
DQN42_RS08400 (NCTC11324_01691)	-	1704752..1705111 (-)	360	WP_003073972.1	MerR family transcriptional regulator	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 16276.88 Da
• Isoelectric Point: 10.4613

>NTDB_id=1141469 DQN42_RS08370 WP_014829819.1 1700104..1700532(-) (comYD) [Streptococcus intermedius strain NCTC11324]
MRNIQKKLVLLQIKGFTILESLLTLFVASFLLLAVSGAVRSSFEQVEEQIFFLEFEHFYRESQKLSNATQRQLDMNFSRA
RISNGYNSLSIPRSVHAPDDLTLRFDKAGGNSSLGKIVFQTKRQTIMYQLYLGNGKFKKTIC

Nucleotide

• Length: 429 bp

>NTDB_id=1141469 DQN42_RS08370 WP_014829819.1 1700104..1700532(-) (comYD) [Streptococcus intermedius strain NCTC11324]
ATGCGAAACATACAAAAGAAACTCGTTCTGTTGCAGATTAAGGGATTTACAATTTTGGAAAGTTTGCTGACTTTGTTTGT
AGCGAGTTTTTTATTACTTGCTGTGTCAGGGGCTGTCCGTTCCTCTTTTGAACAAGTGGAAGAGCAGATTTTCTTTCTTG
AGTTTGAGCATTTTTACCGAGAAAGTCAGAAGTTGAGTAATGCTACTCAAAGGCAATTGGACATGAATTTTTCTCGTGCG
CGAATTTCTAATGGGTACAATTCTTTATCAATTCCTCGCTCGGTTCACGCTCCAGATGATTTAACACTTCGTTTTGATAA
GGCAGGTGGTAATTCCTCGCTTGGTAAGATTGTATTTCAGACGAAAAGACAGACAATTATGTATCAATTATATCTAGGAA
ATGGAAAATTTAAGAAAACAATATGTTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus gordonii str. Challis substr. CH1	60	91.549	0.549
comGD/cglD	Streptococcus mitis NCTC 12261	55.039	90.845	0.5
comGD/cglD	Streptococcus mitis SK321	54.331	89.437	0.486
comGD/cglD	Streptococcus pneumoniae Rx1	54.331	89.437	0.486
comGD/cglD	Streptococcus pneumoniae D39	54.331	89.437	0.486
comGD/cglD	Streptococcus pneumoniae R6	54.331	89.437	0.486
comGD/cglD	Streptococcus pneumoniae TIGR4	53.543	89.437	0.479
comYD	Streptococcus mutans UA140	49.231	91.549	0.451
comYD	Streptococcus mutans UA159	49.231	91.549	0.451