Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   DQN23_RS01725 Genome accession   NZ_LS483403
Coordinates   309488..309964 (+) Length   158 a.a.
NCBI ID   WP_111712607.1    Uniprot ID   -
Organism   Streptococcus lutetiensis strain NCTC13774     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 301722..309964 309488..309964 within 0


Gene organization within MGE regions


Location: 301722..309964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN23_RS09155 (NCTC13774_00342) - 301951..302202 (-) 252 Protein_274 IS3 family transposase -
  DQN23_RS01695 (NCTC13774_00343) - 302268..303521 (-) 1254 WP_111712628.1 ISL3 family transposase -
  DQN23_RS01725 (NCTC13774_00349) comX/sigX 309488..309964 (+) 477 WP_111712607.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 19479.33 Da        Isoelectric Point: 8.6905

>NTDB_id=1140336 DQN23_RS01725 WP_111712607.1 309488..309964(+) (comX/sigX) [Streptococcus lutetiensis strain NCTC13774]
MDFERYFQTVKPIILKLRRYYFVKLWDYEDWIQEGRIIFFELVEEHPDLLINEGKRYSYFKTKFSNHVKDIIRHQESFKR
KFNHMPYEEIGDISHCVPQVSFFEVADYVAYQDSLARLRRTLGREDRLKLEKVIRGERFEGKKDFLKSIEPYFSDFRP

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1140336 DQN23_RS01725 WP_111712607.1 309488..309964(+) (comX/sigX) [Streptococcus lutetiensis strain NCTC13774]
GTGGATTTTGAACGCTATTTTCAAACGGTTAAACCAATTATTTTAAAATTACGCCGTTATTATTTTGTCAAACTCTGGGA
TTATGAGGATTGGATTCAAGAGGGACGTATTATTTTCTTTGAACTTGTAGAGGAACATCCTGATCTCTTAATTAATGAAG
GCAAACGTTATAGCTACTTTAAAACAAAATTTTCTAACCATGTTAAAGATATTATCCGCCATCAGGAATCCTTTAAACGA
AAATTTAATCATATGCCTTATGAAGAAATTGGTGATATTAGTCACTGTGTACCCCAGGTATCTTTCTTTGAAGTCGCAGA
TTACGTGGCTTATCAGGATAGCTTAGCACGTTTACGAAGAACATTGGGAAGAGAAGATAGACTGAAGTTGGAAAAAGTGA
TTCGTGGGGAACGTTTTGAAGGGAAGAAAGACTTCTTAAAAAGCATTGAACCGTATTTCTCAGATTTTAGACCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.