Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   DQM75_RS08440 Genome accession   NZ_LS483380
Coordinates   1766478..1766963 (-) Length   161 a.a.
NCBI ID   WP_111692757.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC11824     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1767290..1768687 1766478..1766963 flank 327


Gene organization within MGE regions


Location: 1766478..1768687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM75_RS08440 (NCTC11824_01697) comX/sigX/comX2/sigX2 1766478..1766963 (-) 486 WP_111692757.1 competence protein ComX Regulator
  DQM75_RS08450 (NCTC11824_01699) - 1767290..1768687 (+) 1398 WP_111692170.1 ISNCY-like element ISSeq2 family transposase -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 19437.41 Da        Isoelectric Point: 8.2702

>NTDB_id=1139354 DQM75_RS08440 WP_111692757.1 1766478..1766963(-) (comX/sigX/comX2/sigX2) [Streptococcus equi subsp. zooepidemicus strain NCTC11824]
MTDDLVRLFDKIKPIIMKLRRHYYIQLWELDDWLQEGRFILYRLLVTYPELIEDEEKLYRYFKTKFSSYLKDVLRQQESQ
KRRFHKMAYEEIGSVGHAIPAGGLGVDDYVAYQLIVKEVEERLTESELSQFRALIRGERFEGRRALLRKIGPYFQDFTGE
K

Nucleotide


Download         Length: 486 bp        

>NTDB_id=1139354 DQM75_RS08440 WP_111692757.1 1766478..1766963(-) (comX/sigX/comX2/sigX2) [Streptococcus equi subsp. zooepidemicus strain NCTC11824]
ATGACTGATGATTTAGTGAGGTTATTTGATAAGATCAAGCCTATTATTATGAAGCTAAGACGGCATTATTATATTCAGCT
GTGGGAGCTAGATGATTGGTTACAGGAGGGGCGGTTCATCTTGTATCGGTTATTGGTCACTTATCCAGAATTGATAGAGG
ATGAGGAGAAGTTGTATCGTTATTTTAAGACCAAGTTTTCCTCTTATTTGAAGGACGTGTTGCGGCAGCAGGAGAGTCAG
AAGCGTCGGTTTCATAAGATGGCTTATGAGGAGATTGGGTCGGTAGGCCATGCGATACCAGCAGGTGGTTTGGGAGTAGA
TGATTATGTGGCTTATCAGTTGATTGTGAAGGAGGTTGAGGAGCGATTGACAGAGAGTGAGCTGTCGCAGTTTCGGGCTT
TGATCAGGGGAGAGCGGTTTGAGGGGAGACGGGCCTTGCTTCGCAAGATAGGACCTTACTTTCAGGACTTTACTGGTGAG
AAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.