Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   DQM48_RS01420 Genome accession   NZ_LS483348
Coordinates   247604..248080 (+) Length   158 a.a.
NCBI ID   WP_081665447.1    Uniprot ID   -
Organism   Streptococcus lutetiensis strain NCTC8738     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 242604..253080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM48_RS01420 (NCTC8738_00288) comX/sigX 247604..248080 (+) 477 WP_081665447.1 sigma-70 family RNA polymerase sigma factor Regulator
  DQM48_RS01425 (NCTC8738_00289) - 248273..248539 (+) 267 WP_020916135.1 ACT domain-containing protein -
  DQM48_RS01430 (NCTC8738_00290) - 248551..249888 (+) 1338 WP_111698210.1 PFL family protein -
  DQM48_RS01435 (NCTC8738_00291) - 250118..250822 (+) 705 WP_020916137.1 histidine phosphatase family protein -
  DQM48_RS01440 (NCTC8738_00292) - 250806..251582 (+) 777 WP_020916138.1 M15 family metallopeptidase -
  DQM48_RS01445 (NCTC8738_00293) - 251579..252169 (+) 591 WP_111698212.1 glycoside hydrolase family 73 protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 19498.37 Da        Isoelectric Point: 9.1153

>NTDB_id=1137806 DQM48_RS01420 WP_081665447.1 247604..248080(+) (comX/sigX) [Streptococcus lutetiensis strain NCTC8738]
MDFERYFQTVKPIILKLRRYYFVKLWDYEDWIQEGRIIFFELVEEHPDLLINEGKRYSYFKTKFSNHVKDIIRHQESFKR
KFNRMPYEEIGDISHCVPQVSFFEVADYVAYQDSLARLRRTLGREDRLKLEKVIRGERFEGKKDFLKSIEPYFSDFRP

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1137806 DQM48_RS01420 WP_081665447.1 247604..248080(+) (comX/sigX) [Streptococcus lutetiensis strain NCTC8738]
GTGGATTTTGAACGCTATTTTCAAACGGTTAAACCAATTATTTTAAAATTACGTCGTTATTATTTTGTCAAACTCTGGGA
TTATGAGGATTGGATTCAAGAGGGACGTATTATTTTCTTTGAACTTGTAGAGGAACATCCTGATCTCTTAATTAATGAAG
GCAAACGTTATAGCTACTTTAAAACAAAATTTTCTAACCATGTTAAAGATATTATCCGCCATCAGGAATCCTTTAAACGA
AAATTTAATCGTATGCCTTATGAAGAAATTGGTGATATTAGTCACTGTGTACCCCAGGTATCTTTCTTTGAAGTCGCAGA
TTACGTGGCTTATCAGGATAGCTTAGCACGTTTACGAAGAACATTGGGAAGAGAAGATAGACTGAAGTTGGAAAAAGTGA
TTCGTGGGGAACGTTTTGAAGGGAAGAAAGACTTCTTAAAAAGCATTGAACCGTATTTCTCAGATTTTAGACCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.