Detailed information
Bioinformatically predicted
Overview
| Name | comYA | Type | Machinery gene |
| Locus tag | DQL23_RS03040 | Genome accession | NZ_LS483341 |
| Coordinates | 642742..643680 (+) | Length | 312 a.a. |
| NCBI ID | WP_046164736.1 | Uniprot ID | - |
| Organism | Streptococcus gordonii strain NCTC7865 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 637742..648680
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQL23_RS03030 (NCTC7865_00604) | rpoC | 638372..642019 (+) | 3648 | WP_060553794.1 | DNA-directed RNA polymerase subunit beta' | - |
| DQL23_RS03035 (NCTC7865_00605) | - | 642270..642629 (+) | 360 | WP_008810065.1 | DUF1033 family protein | - |
| DQL23_RS03040 (NCTC7865_00606) | comYA | 642742..643680 (+) | 939 | WP_046164736.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| DQL23_RS03045 (NCTC7865_00607) | comYB | 643613..644647 (+) | 1035 | WP_060553795.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| DQL23_RS03050 (NCTC7865_00608) | comYC | 644644..644961 (+) | 318 | WP_045634162.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| DQL23_RS03055 (NCTC7865_00609) | comYD | 644921..645349 (+) | 429 | WP_060553796.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| DQL23_RS03060 (NCTC7865_00610) | comGE/cglE | 645321..645614 (+) | 294 | WP_060553797.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| DQL23_RS03065 (NCTC7865_00611) | comGF/cglF | 645598..646035 (+) | 438 | WP_060553798.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| DQL23_RS03070 (NCTC7865_00612) | comGG | 646016..646447 (+) | 432 | WP_223358700.1 | competence type IV pilus minor pilin ComGG | - |
| DQL23_RS03075 (NCTC7865_00613) | comYH | 646478..647431 (+) | 954 | WP_060553799.1 | class I SAM-dependent methyltransferase | Machinery gene |
| DQL23_RS03080 (NCTC7865_00614) | - | 647481..648671 (+) | 1191 | WP_060553800.1 | acetate kinase | - |
Sequence
Protein
Download Length: 312 a.a. Molecular weight: 35828.81 Da Isoelectric Point: 5.4496
>NTDB_id=1137462 DQL23_RS03040 WP_046164736.1 642742..643680(+) (comYA) [Streptococcus gordonii strain NCTC7865]
MVQKIAQAIVRQAKEECAQDIYFVPKDDCYELYMRIGDERRFIQTYDFDQLAAVISHFKFLAGMNVGEKRRSQLGSCDYR
YDDKETSIRLSTVGDYRGYESLVIRLLHDEETELKFWFTHFPEFREKFKDRGLYLFSGPVGSGKTTLMHQLAQLKFKGQQ
VMSIEDPVEIKQEDMLQLQLNETIGLTYESLIKLSLRHRPDLLIIGEIRDSETARAVVRASLTGATVFSTIHAKSIPGVY
ERLLELGVSEEELKIVLQGICYQRLIGGGGVIDFASNNYQEHEPTVWNQQIDQLLAAGHIHPEQAEAEKIRN
MVQKIAQAIVRQAKEECAQDIYFVPKDDCYELYMRIGDERRFIQTYDFDQLAAVISHFKFLAGMNVGEKRRSQLGSCDYR
YDDKETSIRLSTVGDYRGYESLVIRLLHDEETELKFWFTHFPEFREKFKDRGLYLFSGPVGSGKTTLMHQLAQLKFKGQQ
VMSIEDPVEIKQEDMLQLQLNETIGLTYESLIKLSLRHRPDLLIIGEIRDSETARAVVRASLTGATVFSTIHAKSIPGVY
ERLLELGVSEEELKIVLQGICYQRLIGGGGVIDFASNNYQEHEPTVWNQQIDQLLAAGHIHPEQAEAEKIRN
Nucleotide
Download Length: 939 bp
>NTDB_id=1137462 DQL23_RS03040 WP_046164736.1 642742..643680(+) (comYA) [Streptococcus gordonii strain NCTC7865]
ATGGTTCAAAAAATTGCCCAGGCGATTGTCCGGCAGGCTAAGGAAGAGTGTGCTCAGGATATTTATTTTGTACCCAAGGA
TGATTGCTATGAACTTTATATGCGGATTGGTGATGAACGACGCTTCATACAGACTTATGATTTTGACCAATTAGCCGCTG
TGATTAGTCATTTTAAATTTTTAGCTGGGATGAATGTAGGAGAAAAACGTCGCAGTCAGCTGGGATCCTGTGATTATCGT
TATGATGATAAGGAAACATCAATTCGTCTGTCAACTGTAGGTGATTATCGTGGATATGAAAGTTTGGTTATTCGACTTTT
GCACGATGAAGAGACAGAATTGAAGTTTTGGTTTACTCATTTTCCTGAGTTTAGAGAGAAGTTTAAGGATCGAGGACTGT
ATCTTTTTTCGGGACCAGTAGGGAGTGGCAAGACCACTCTCATGCATCAATTAGCTCAGCTAAAATTTAAGGGTCAGCAG
GTTATGTCCATTGAGGATCCTGTTGAAATCAAGCAAGAGGATATGCTTCAGCTACAGCTGAATGAAACGATTGGTCTGAC
TTACGAAAGTCTGATTAAGCTTTCTCTGCGTCACCGTCCGGACTTGCTCATCATTGGAGAAATTCGGGATAGTGAAACTG
CTAGAGCTGTGGTTCGAGCTAGCTTGACGGGAGCTACAGTTTTTTCAACGATTCATGCTAAAAGCATTCCTGGTGTTTAC
GAGCGTTTGTTGGAGCTGGGTGTCAGCGAAGAGGAGCTAAAAATTGTTTTACAGGGTATTTGCTATCAGCGCTTGATTGG
GGGAGGAGGTGTGATAGACTTTGCCAGCAACAACTACCAAGAACACGAGCCGACCGTCTGGAATCAGCAGATTGATCAGC
TTCTTGCAGCAGGACATATCCATCCTGAGCAAGCAGAGGCAGAAAAAATTAGGAACTAG
ATGGTTCAAAAAATTGCCCAGGCGATTGTCCGGCAGGCTAAGGAAGAGTGTGCTCAGGATATTTATTTTGTACCCAAGGA
TGATTGCTATGAACTTTATATGCGGATTGGTGATGAACGACGCTTCATACAGACTTATGATTTTGACCAATTAGCCGCTG
TGATTAGTCATTTTAAATTTTTAGCTGGGATGAATGTAGGAGAAAAACGTCGCAGTCAGCTGGGATCCTGTGATTATCGT
TATGATGATAAGGAAACATCAATTCGTCTGTCAACTGTAGGTGATTATCGTGGATATGAAAGTTTGGTTATTCGACTTTT
GCACGATGAAGAGACAGAATTGAAGTTTTGGTTTACTCATTTTCCTGAGTTTAGAGAGAAGTTTAAGGATCGAGGACTGT
ATCTTTTTTCGGGACCAGTAGGGAGTGGCAAGACCACTCTCATGCATCAATTAGCTCAGCTAAAATTTAAGGGTCAGCAG
GTTATGTCCATTGAGGATCCTGTTGAAATCAAGCAAGAGGATATGCTTCAGCTACAGCTGAATGAAACGATTGGTCTGAC
TTACGAAAGTCTGATTAAGCTTTCTCTGCGTCACCGTCCGGACTTGCTCATCATTGGAGAAATTCGGGATAGTGAAACTG
CTAGAGCTGTGGTTCGAGCTAGCTTGACGGGAGCTACAGTTTTTTCAACGATTCATGCTAAAAGCATTCCTGGTGTTTAC
GAGCGTTTGTTGGAGCTGGGTGTCAGCGAAGAGGAGCTAAAAATTGTTTTACAGGGTATTTGCTATCAGCGCTTGATTGG
GGGAGGAGGTGTGATAGACTTTGCCAGCAACAACTACCAAGAACACGAGCCGACCGTCTGGAATCAGCAGATTGATCAGC
TTCTTGCAGCAGGACATATCCATCCTGAGCAAGCAGAGGCAGAAAAAATTAGGAACTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYA | Streptococcus gordonii str. Challis substr. CH1 |
99.359 |
100 |
0.994 |
| comGA/cglA/cilD | Streptococcus mitis NCTC 12261 |
78.065 |
99.359 |
0.776 |
| comGA/cglA/cilD | Streptococcus pneumoniae Rx1 |
77.742 |
99.359 |
0.772 |
| comGA/cglA/cilD | Streptococcus pneumoniae D39 |
77.742 |
99.359 |
0.772 |
| comGA/cglA/cilD | Streptococcus pneumoniae R6 |
77.742 |
99.359 |
0.772 |
| comGA/cglA/cilD | Streptococcus pneumoniae TIGR4 |
77.742 |
99.359 |
0.772 |
| comYA | Streptococcus mutans UA159 |
67.093 |
100 |
0.673 |
| comYA | Streptococcus mutans UA140 |
67.093 |
100 |
0.673 |
| comGA/cglA | Streptococcus sobrinus strain NIDR 6715-7 |
65.064 |
100 |
0.651 |
| comGA | Lactococcus lactis subsp. cremoris KW2 |
54.808 |
100 |
0.548 |