Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYD   Type   Machinery gene
Locus tag   DQL23_RS03055 Genome accession   NZ_LS483341
Coordinates   644921..645349 (+) Length   142 a.a.
NCBI ID   WP_060553796.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC7865     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 639921..650349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL23_RS03035 (NCTC7865_00605) - 642270..642629 (+) 360 WP_008810065.1 DUF1033 family protein -
  DQL23_RS03040 (NCTC7865_00606) comYA 642742..643680 (+) 939 WP_046164736.1 competence type IV pilus ATPase ComGA Machinery gene
  DQL23_RS03045 (NCTC7865_00607) comYB 643613..644647 (+) 1035 WP_060553795.1 competence type IV pilus assembly protein ComGB Machinery gene
  DQL23_RS03050 (NCTC7865_00608) comYC 644644..644961 (+) 318 WP_045634162.1 competence type IV pilus major pilin ComGC Machinery gene
  DQL23_RS03055 (NCTC7865_00609) comYD 644921..645349 (+) 429 WP_060553796.1 competence type IV pilus minor pilin ComGD Machinery gene
  DQL23_RS03060 (NCTC7865_00610) comGE/cglE 645321..645614 (+) 294 WP_060553797.1 competence type IV pilus minor pilin ComGE Machinery gene
  DQL23_RS03065 (NCTC7865_00611) comGF/cglF 645598..646035 (+) 438 WP_060553798.1 competence type IV pilus minor pilin ComGF Machinery gene
  DQL23_RS03070 (NCTC7865_00612) comGG 646016..646447 (+) 432 WP_223358700.1 competence type IV pilus minor pilin ComGG -
  DQL23_RS03075 (NCTC7865_00613) comYH 646478..647431 (+) 954 WP_060553799.1 class I SAM-dependent methyltransferase Machinery gene
  DQL23_RS03080 (NCTC7865_00614) - 647481..648671 (+) 1191 WP_060553800.1 acetate kinase -
  DQL23_RS03085 (NCTC7865_00615) - 648720..649385 (+) 666 WP_060553801.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16074.66 Da        Isoelectric Point: 10.1975

>NTDB_id=1137465 DQL23_RS03055 WP_060553796.1 644921..645349(+) (comYD) [Streptococcus gordonii strain NCTC7865]
MVRTIVRLRQLQIKAFTVLESLLVLMISSFILLALSSSVQATFEQIQAKIFFLEFEHFYQESQKLSVSSQRKLVLEISSQ
EISNGYARLPIPKGIQAPESTQIYFDKAGGNSSLSKVQFQTKEGLVTYQLYIGNGKFKKTTN

Nucleotide


Download         Length: 429 bp        

>NTDB_id=1137465 DQL23_RS03055 WP_060553796.1 644921..645349(+) (comYD) [Streptococcus gordonii strain NCTC7865]
ATGGTAAGAACAATAGTGAGACTCAGGCAGTTGCAAATTAAGGCCTTTACAGTTTTGGAAAGCCTCTTGGTCTTGATGAT
TAGCAGTTTTATCTTGCTGGCTCTATCAAGTTCAGTTCAAGCTACTTTTGAGCAGATTCAGGCAAAGATCTTCTTTTTAG
AATTTGAGCATTTTTATCAGGAAAGTCAGAAGCTTAGCGTATCTTCTCAGAGAAAGCTGGTGCTAGAAATATCCAGTCAA
GAGATTTCAAACGGTTATGCTCGTCTTCCAATTCCCAAAGGAATCCAAGCACCTGAATCTACACAGATCTATTTTGATAA
GGCTGGTGGTAATTCTTCACTCAGTAAAGTTCAGTTTCAAACCAAGGAAGGACTGGTGACCTATCAACTCTATATTGGAA
ATGGTAAATTTAAGAAAACGACAAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYD Streptococcus gordonii str. Challis substr. CH1

99.296

100

0.993
  comGD/cglD Streptococcus mitis NCTC 12261

56.716

94.366

0.535
  comGD/cglD Streptococcus mitis SK321

59.055

89.437

0.528
  comGD/cglD Streptococcus pneumoniae Rx1

59.055

89.437

0.528
  comGD/cglD Streptococcus pneumoniae R6

59.055

89.437

0.528
  comGD/cglD Streptococcus pneumoniae D39

59.055

89.437

0.528
  comGD/cglD Streptococcus pneumoniae TIGR4

59.055

89.437

0.528
  comYD Streptococcus mutans UA140

50

91.549

0.458
  comYD Streptococcus mutans UA159

50

91.549

0.458
  comGD Lactococcus lactis subsp. cremoris KW2

35.032

100

0.387

Multiple sequence alignment