Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | DQL23_RS03075 | Genome accession | NZ_LS483341 |
| Coordinates | 646478..647431 (+) | Length | 317 a.a. |
| NCBI ID | WP_060553799.1 | Uniprot ID | - |
| Organism | Streptococcus gordonii strain NCTC7865 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 641478..652431
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQL23_RS03035 (NCTC7865_00605) | - | 642270..642629 (+) | 360 | WP_008810065.1 | DUF1033 family protein | - |
| DQL23_RS03040 (NCTC7865_00606) | comYA | 642742..643680 (+) | 939 | WP_046164736.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| DQL23_RS03045 (NCTC7865_00607) | comYB | 643613..644647 (+) | 1035 | WP_060553795.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| DQL23_RS03050 (NCTC7865_00608) | comYC | 644644..644961 (+) | 318 | WP_045634162.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| DQL23_RS03055 (NCTC7865_00609) | comYD | 644921..645349 (+) | 429 | WP_060553796.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| DQL23_RS03060 (NCTC7865_00610) | comGE/cglE | 645321..645614 (+) | 294 | WP_060553797.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| DQL23_RS03065 (NCTC7865_00611) | comGF/cglF | 645598..646035 (+) | 438 | WP_060553798.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| DQL23_RS03070 (NCTC7865_00612) | comGG | 646016..646447 (+) | 432 | WP_223358700.1 | competence type IV pilus minor pilin ComGG | - |
| DQL23_RS03075 (NCTC7865_00613) | comYH | 646478..647431 (+) | 954 | WP_060553799.1 | class I SAM-dependent methyltransferase | Machinery gene |
| DQL23_RS03080 (NCTC7865_00614) | - | 647481..648671 (+) | 1191 | WP_060553800.1 | acetate kinase | - |
| DQL23_RS03085 (NCTC7865_00615) | - | 648720..649385 (+) | 666 | WP_060553801.1 | CPBP family intramembrane glutamic endopeptidase | - |
| DQL23_RS03090 (NCTC7865_00616) | folP | 649462..650427 (+) | 966 | WP_060553802.1 | dihydropteroate synthase | - |
| DQL23_RS03095 (NCTC7865_00617) | - | 650432..651763 (+) | 1332 | WP_060553925.1 | bifunctional folylpolyglutamate synthase/dihydrofolate synthase | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 36014.13 Da Isoelectric Point: 4.9691
>NTDB_id=1137468 DQL23_RS03075 WP_060553799.1 646478..647431(+) (comYH) [Streptococcus gordonii strain NCTC7865]
MNFEKIEEAYTLLLENVQVIQNKLSTNFYDALIEQNGIYLDGQTDLEIVKKNHQTLKSLKLSREEWRRAYQFILMKASQT
EPLQANHQFTPDAIGFLLIFIIDQLMVASDITLLEMGSGTGNLAETILNNSRKEIDYLGLEIDDLLIDLSASIAEVMGSK
AHFAQGDAVRPQVLKESDLIISDLPVGYYPDDQIASRYQVASQTEHTYAHHLLMEQALKYLKVDGYAIFLAPNHLLTSPQ
SDLLKSWLKDNASLVAMIALPEKLFASASQAKTVFVLQKQKNIKAEPFAYALTDLQNHDEITRFRESFQKWRKVSEN
MNFEKIEEAYTLLLENVQVIQNKLSTNFYDALIEQNGIYLDGQTDLEIVKKNHQTLKSLKLSREEWRRAYQFILMKASQT
EPLQANHQFTPDAIGFLLIFIIDQLMVASDITLLEMGSGTGNLAETILNNSRKEIDYLGLEIDDLLIDLSASIAEVMGSK
AHFAQGDAVRPQVLKESDLIISDLPVGYYPDDQIASRYQVASQTEHTYAHHLLMEQALKYLKVDGYAIFLAPNHLLTSPQ
SDLLKSWLKDNASLVAMIALPEKLFASASQAKTVFVLQKQKNIKAEPFAYALTDLQNHDEITRFRESFQKWRKVSEN
Nucleotide
Download Length: 954 bp
>NTDB_id=1137468 DQL23_RS03075 WP_060553799.1 646478..647431(+) (comYH) [Streptococcus gordonii strain NCTC7865]
ATGAATTTTGAAAAAATCGAAGAAGCCTATACGCTCCTTTTAGAAAATGTCCAAGTCATTCAAAACAAGCTTTCAACTAA
TTTTTATGATGCCTTAATCGAGCAAAACGGTATCTATTTGGATGGACAAACGGACTTAGAAATCGTTAAAAAAAATCATC
AGACCTTGAAGAGCTTAAAGTTAAGCAGAGAAGAATGGCGCAGAGCCTATCAGTTCATTCTGATGAAGGCTTCTCAGACA
GAGCCTTTACAAGCCAATCATCAGTTTACACCAGATGCCATTGGTTTTCTGCTGATTTTCATCATTGACCAGCTGATGGT
AGCATCAGATATTACTCTTCTTGAGATGGGGAGCGGAACCGGAAATCTTGCAGAGACAATCCTGAATAATAGTCGGAAAG
AGATTGATTATCTAGGATTAGAGATTGATGATTTACTGATTGACCTATCTGCCAGTATTGCAGAAGTGATGGGATCAAAA
GCCCATTTTGCCCAGGGAGATGCTGTGCGCCCTCAAGTTCTAAAAGAGAGCGACTTGATTATTAGTGATCTGCCTGTCGG
TTACTATCCGGATGATCAGATTGCCAGTCGCTACCAGGTAGCCAGTCAGACGGAGCACACCTATGCTCATCATCTATTGA
TGGAGCAAGCTTTAAAGTATTTGAAGGTTGATGGTTATGCTATCTTCTTAGCTCCTAATCACCTCTTGACCAGCCCGCAG
AGCGACTTGCTTAAATCTTGGCTCAAAGACAATGCCAGCTTGGTTGCGATGATTGCTTTGCCAGAAAAACTCTTTGCATC
AGCCTCTCAGGCTAAGACGGTTTTTGTTTTGCAAAAACAAAAAAATATAAAAGCAGAACCTTTTGCCTATGCATTGACAG
ATCTACAAAATCATGATGAAATTACTCGCTTTCGCGAAAGTTTTCAAAAATGGCGCAAAGTTAGTGAAAACTGA
ATGAATTTTGAAAAAATCGAAGAAGCCTATACGCTCCTTTTAGAAAATGTCCAAGTCATTCAAAACAAGCTTTCAACTAA
TTTTTATGATGCCTTAATCGAGCAAAACGGTATCTATTTGGATGGACAAACGGACTTAGAAATCGTTAAAAAAAATCATC
AGACCTTGAAGAGCTTAAAGTTAAGCAGAGAAGAATGGCGCAGAGCCTATCAGTTCATTCTGATGAAGGCTTCTCAGACA
GAGCCTTTACAAGCCAATCATCAGTTTACACCAGATGCCATTGGTTTTCTGCTGATTTTCATCATTGACCAGCTGATGGT
AGCATCAGATATTACTCTTCTTGAGATGGGGAGCGGAACCGGAAATCTTGCAGAGACAATCCTGAATAATAGTCGGAAAG
AGATTGATTATCTAGGATTAGAGATTGATGATTTACTGATTGACCTATCTGCCAGTATTGCAGAAGTGATGGGATCAAAA
GCCCATTTTGCCCAGGGAGATGCTGTGCGCCCTCAAGTTCTAAAAGAGAGCGACTTGATTATTAGTGATCTGCCTGTCGG
TTACTATCCGGATGATCAGATTGCCAGTCGCTACCAGGTAGCCAGTCAGACGGAGCACACCTATGCTCATCATCTATTGA
TGGAGCAAGCTTTAAAGTATTTGAAGGTTGATGGTTATGCTATCTTCTTAGCTCCTAATCACCTCTTGACCAGCCCGCAG
AGCGACTTGCTTAAATCTTGGCTCAAAGACAATGCCAGCTTGGTTGCGATGATTGCTTTGCCAGAAAAACTCTTTGCATC
AGCCTCTCAGGCTAAGACGGTTTTTGTTTTGCAAAAACAAAAAAATATAAAAGCAGAACCTTTTGCCTATGCATTGACAG
ATCTACAAAATCATGATGAAATTACTCGCTTTCGCGAAAGTTTTCAAAAATGGCGCAAAGTTAGTGAAAACTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA159 |
58.786 |
98.738 |
0.58 |
| comYH | Streptococcus mutans UA140 |
58.786 |
98.738 |
0.58 |