Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   H0511_RS00935 Genome accession   NZ_LR822017
Coordinates   162313..162810 (+) Length   165 a.a.
NCBI ID   WP_179974167.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_336     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 157313..167810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0511_RS00925 (STHERMO_0161) - 159894..160928 (-) 1035 Protein_131 ISL3 family transposase -
  H0511_RS00930 tnpA 161720..162021 (+) 302 Protein_132 IS200/IS605 family transposase -
  H0511_RS00935 (STHERMO_0163) comX 162313..162810 (+) 498 WP_179974167.1 sigma-70 family RNA polymerase sigma factor Regulator
  H0511_RS00940 (STHERMO_0164) - 162910..163752 (-) 843 WP_179974168.1 mechanosensitive ion channel family protein -
  H0511_RS00945 (STHERMO_0165) tig 163895..165178 (+) 1284 WP_179974169.1 trigger factor -
  H0511_RS00950 (STHERMO_0166) rpoE 165336..165911 (+) 576 WP_179972534.1 DNA-directed RNA polymerase subunit delta -
  H0511_RS00955 (STHERMO_0167) - 166162..167766 (+) 1605 WP_179974170.1 CTP synthase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 20158.20 Da        Isoelectric Point: 7.5839

>NTDB_id=1130945 H0511_RS00935 WP_179974167.1 162313..162810(+) (comX) [Streptococcus thermophilus isolate STH_CIRM_336]
MEQEVFVKAYEKVRPIVLKAFRKYFIQLWDQADMEQEAMMTLYQLLKKFPDLEKDNDKLRRYFKTKFRNRLNDEVRRQES
VKRQANRQCYVEISDIAFCIPNKELDMVDRLAYDEQLNAFREQLSSEDSLKLDRLLGGECFRGRKKMIRELRFWMVDFDP
CNEEN

Nucleotide


Download         Length: 498 bp        

>NTDB_id=1130945 H0511_RS00935 WP_179974167.1 162313..162810(+) (comX) [Streptococcus thermophilus isolate STH_CIRM_336]
ATGGAACAAGAAGTTTTTGTTAAGGCATATGAAAAGGTAAGGCCAATTGTACTTAAGGCTTTTAGGAAATACTTTATTCA
GCTTTGGGATCAAGCTGACATGGAGCAAGAAGCGATGATGACTTTGTATCAGCTTTTAAAAAAGTTTCCTGATTTAGAGA
AAGATAATGATAAGTTACGTCGTTACTTTAAAACTAAGTTTAGGAATCGACTGAATGATGAAGTGAGGCGGCAGGAGTCA
GTAAAACGTCAAGCTAATAGACAGTGCTATGTTGAAATTTCAGATATTGCCTTTTGTATTCCCAATAAGGAGCTAGATAT
GGTTGATAGACTTGCTTATGATGAACAGCTTAATGCTTTTCGTGAGCAGTTATCATCGGAGGATTCTCTTAAGTTAGATC
GATTGTTGGGTGGTGAATGCTTTAGGGGAAGGAAAAAGATGATACGAGAGTTAAGATTTTGGATGGTTGACTTTGATCCA
TGTAATGAAGAAAACTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(10-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.