Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   H0502_RS07460 Genome accession   NZ_LR822013
Coordinates   1485336..1485833 (-) Length   165 a.a.
NCBI ID   WP_002949220.1    Uniprot ID   A0A0M4HKA9
Organism   Streptococcus thermophilus isolate STH_CIRM_32     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 1486587..1490840 1485336..1485833 flank 754


Gene organization within MGE regions


Location: 1485336..1490840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0502_RS07460 (STHERMO_1721) comX 1485336..1485833 (-) 498 WP_002949220.1 sigma factor Regulator
  H0502_RS07465 - 1486125..1486229 (-) 105 Protein_1490 IS200/IS605 family transposase -
  H0502_RS09675 (STHERMO_1722) - 1486587..1487051 (+) 465 Protein_1491 transposase family protein -
  H0502_RS07475 (STHERMO_1723) - 1487311..1488501 (-) 1191 WP_011680651.1 SAM-dependent methyltransferase -
  H0502_RS07480 (STHERMO_1724) - 1488583..1488909 (-) 327 WP_014607875.1 M20/M25/M40 family metallo-hydrolase -
  H0502_RS07485 - 1489098..1489420 (+) 323 Protein_1494 transposase -
  H0502_RS07490 (STHERMO_1726) - 1489505..1489726 (-) 222 WP_002948904.1 DUF4649 family protein -
  H0502_RS07495 (STHERMO_1727) - 1490019..1490833 (+) 815 Protein_1496 ISL3 family transposase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 20160.12 Da        Isoelectric Point: 5.2073

>NTDB_id=1130805 H0502_RS07460 WP_002949220.1 1485336..1485833(-) (comX) [Streptococcus thermophilus isolate STH_CIRM_32]
MEQEVFVKAYEKVRPIVLKAFRQYFIQLWDQADMEQEAMMTLYQLLKKFPDLEKDDDKLRRYFKTKFRNRLNDEVRRQES
VKRQANRQCYVEISDIAFCIPNKELDMVDRLAYDEQLNAFREQLSSEDSLKLDRLLGGECFRGRKKMIRELRFWMVDFDP
CNEED

Nucleotide


Download         Length: 498 bp        

>NTDB_id=1130805 H0502_RS07460 WP_002949220.1 1485336..1485833(-) (comX) [Streptococcus thermophilus isolate STH_CIRM_32]
ATGGAACAAGAAGTTTTTGTTAAGGCATATGAAAAGGTAAGGCCAATTGTACTTAAGGCGTTTAGGCAATACTTTATTCA
GCTTTGGGATCAAGCTGACATGGAGCAAGAGGCGATGATGACTTTGTATCAGCTTTTAAAAAAGTTTCCTGATTTAGAGA
AAGATGATGATAAGTTACGTCGTTACTTTAAAACTAAGTTTAGGAATCGACTTAATGATGAAGTGAGGCGGCAGGAGTCA
GTAAAACGTCAAGCTAATAGACAGTGTTATGTTGAAATTTCAGATATTGCCTTTTGTATTCCCAATAAGGAGCTAGATAT
GGTTGATAGACTTGCTTATGATGAACAGCTTAATGCTTTTCGTGAGCAGTTATCATCGGAAGATTCTCTTAAGTTGGATC
GATTGTTGGGTGGTGAATGCTTTAGGGGAAGGAAAAAGATGATACGAGAGTTAAGATTTTGGATGGTTGACTTTGATCCA
TGTAATGAAGAAGACTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(10-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M4HKA9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.