Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   H0507_RS00860 Genome accession   NZ_LR822010
Coordinates   147459..147956 (+) Length   165 a.a.
NCBI ID   WP_002949220.1    Uniprot ID   A0A0M4HKA9
Organism   Streptococcus thermophilus isolate STH_CIRM_29     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 142459..152956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0507_RS00825 (STHERMO_0142) - 142459..143273 (-) 815 Protein_113 ISL3 family transposase -
  H0507_RS00830 (STHERMO_0143) - 143566..143787 (+) 222 WP_002948904.1 DUF4649 family protein -
  H0507_RS00835 - 143872..144194 (-) 323 Protein_115 transposase -
  H0507_RS00840 (STHERMO_0145) - 144383..144709 (+) 327 WP_082302972.1 M20/M25/M40 family metallo-hydrolase -
  H0507_RS00845 (STHERMO_0146) - 144791..145981 (+) 1191 WP_002949216.1 SAM-dependent methyltransferase -
  H0507_RS00850 (STHERMO_0148) - 146241..146705 (-) 465 Protein_118 transposase family protein -
  H0507_RS00855 - 147063..147167 (+) 105 Protein_119 IS200/IS605 family transposase -
  H0507_RS00860 (STHERMO_0149) comX 147459..147956 (+) 498 WP_002949220.1 sigma factor Regulator
  H0507_RS00865 (STHERMO_0150) - 148056..148898 (-) 843 WP_011226789.1 mechanosensitive ion channel family protein -
  H0507_RS00870 (STHERMO_0151) tig 149039..150322 (+) 1284 WP_011225339.1 trigger factor -
  H0507_RS00875 (STHERMO_0152) rpoE 150480..151061 (+) 582 WP_011225340.1 DNA-directed RNA polymerase subunit delta -
  H0507_RS00880 - 151312..152916 (+) 1605 Protein_124 CTP synthase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 20160.12 Da        Isoelectric Point: 5.2073

>NTDB_id=1130591 H0507_RS00860 WP_002949220.1 147459..147956(+) (comX) [Streptococcus thermophilus isolate STH_CIRM_29]
MEQEVFVKAYEKVRPIVLKAFRQYFIQLWDQADMEQEAMMTLYQLLKKFPDLEKDDDKLRRYFKTKFRNRLNDEVRRQES
VKRQANRQCYVEISDIAFCIPNKELDMVDRLAYDEQLNAFREQLSSEDSLKLDRLLGGECFRGRKKMIRELRFWMVDFDP
CNEED

Nucleotide


Download         Length: 498 bp        

>NTDB_id=1130591 H0507_RS00860 WP_002949220.1 147459..147956(+) (comX) [Streptococcus thermophilus isolate STH_CIRM_29]
ATGGAACAAGAAGTTTTTGTTAAGGCATATGAAAAGGTAAGGCCAATTGTACTTAAGGCTTTTAGGCAATACTTTATTCA
GCTTTGGGATCAAGCTGACATGGAGCAAGAGGCGATGATGACTTTGTATCAGCTTTTAAAAAAGTTTCCTGATTTAGAGA
AAGATGATGATAAGTTACGTCGTTACTTTAAAACTAAGTTTAGGAATCGACTTAATGATGAAGTGAGGCGGCAGGAGTCA
GTAAAACGTCAAGCTAATAGACAGTGCTATGTTGAAATTTCAGATATTGCCTTTTGTATTCCCAATAAGGAGCTAGATAT
GGTTGATAGACTTGCTTATGATGAACAGCTTAATGCATTTCGTGAGCAGTTATCATCGGAAGATTCTCTTAAGTTGGATC
GATTGTTGGGTGGTGAATGCTTTAGGGGAAGGAAAAAGATGATACGAGAGTTAAGATTTTGGATGGTTGACTTTGATCCA
TGTAATGAAGAAGACTGA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(10-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.