Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   H0501_RS00905 Genome accession   NZ_LR822008
Coordinates   154152..154649 (+) Length   165 a.a.
NCBI ID   WP_002949220.1    Uniprot ID   A0A0M4HKA9
Organism   Streptococcus thermophilus isolate STH_CIRM_18     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 149152..159649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0501_RS00870 (STHERMO_0145) - 149152..149966 (-) 815 Protein_119 ISL3 family transposase -
  H0501_RS00875 (STHERMO_0146) - 150259..150480 (+) 222 WP_002948904.1 DUF4649 family protein -
  H0501_RS00880 - 150565..150887 (-) 323 Protein_121 transposase -
  H0501_RS00885 (STHERMO_0148) - 151076..151402 (+) 327 WP_014607875.1 M20/M25/M40 family metallo-hydrolase -
  H0501_RS00890 (STHERMO_0149) - 151484..152674 (+) 1191 WP_011680651.1 SAM-dependent methyltransferase -
  H0501_RS00895 (STHERMO_0150) - 152934..153398 (-) 465 Protein_124 transposase family protein -
  H0501_RS00900 - 153756..153860 (+) 105 Protein_125 IS200/IS605 family transposase -
  H0501_RS00905 (STHERMO_0151) comX 154152..154649 (+) 498 WP_002949220.1 sigma factor Regulator
  H0501_RS00910 (STHERMO_0152) - 154749..155591 (-) 843 WP_024704159.1 mechanosensitive ion channel family protein -
  H0501_RS00915 (STHERMO_0153) tig 155732..157015 (+) 1284 WP_011680653.1 trigger factor -
  H0501_RS00920 (STHERMO_0154) rpoE 157173..157748 (+) 576 WP_002949228.1 DNA-directed RNA polymerase subunit delta -
  H0501_RS00925 (STHERMO_0155) - 157999..159603 (+) 1605 WP_179970777.1 CTP synthase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 20160.12 Da        Isoelectric Point: 5.2073

>NTDB_id=1130475 H0501_RS00905 WP_002949220.1 154152..154649(+) (comX) [Streptococcus thermophilus isolate STH_CIRM_18]
MEQEVFVKAYEKVRPIVLKAFRQYFIQLWDQADMEQEAMMTLYQLLKKFPDLEKDDDKLRRYFKTKFRNRLNDEVRRQES
VKRQANRQCYVEISDIAFCIPNKELDMVDRLAYDEQLNAFREQLSSEDSLKLDRLLGGECFRGRKKMIRELRFWMVDFDP
CNEED

Nucleotide


Download         Length: 498 bp        

>NTDB_id=1130475 H0501_RS00905 WP_002949220.1 154152..154649(+) (comX) [Streptococcus thermophilus isolate STH_CIRM_18]
ATGGAACAAGAAGTTTTTGTTAAGGCATATGAAAAGGTAAGGCCAATTGTACTTAAGGCGTTTAGGCAATACTTTATTCA
GCTTTGGGATCAAGCTGACATGGAGCAAGAGGCGATGATGACTTTGTATCAGCTTTTAAAAAAGTTTCCTGATTTAGAGA
AAGATGATGATAAGTTACGTCGTTACTTTAAAACTAAGTTTAGGAATCGACTTAATGATGAAGTGAGGCGGCAGGAGTCA
GTAAAACGTCAAGCTAATAGACAGTGTTATGTTGAAATTTCAGATATTGCCTTTTGTATTCCCAATAAGGAGCTAGATAT
GGTTGATAGACTTGCTTATGATGAACAGCTTAATGCTTTTCGTGAGCAGTTATCATCGGAAGATTCTCTTAAGTTGGATC
GATTGTTGGGTGGTGAATGCTTTAGGGGAAGGAAAAAGATGATACGAGAGTTAAGATTTTGGATGGTTGACTTTGATCCA
TGTAATGAAGAAGACTGA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(10-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.