Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | OU5_RS21805 | Genome accession | NZ_CP005960 |
| Coordinates | 4880670..4881077 (+) | Length | 135 a.a. |
| NCBI ID | WP_010467585.1 | Uniprot ID | A0A024EFQ4 |
| Organism | Pseudomonas mandelii JR-1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4875670..4886077
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OU5_RS21780 (OU5_4362) | yacG | 4875833..4876033 (-) | 201 | WP_010467579.1 | DNA gyrase inhibitor YacG | - |
| OU5_RS21785 (OU5_4363) | coaE | 4876030..4876653 (-) | 624 | WP_042932554.1 | dephospho-CoA kinase | - |
| OU5_RS21790 (OU5_4364) | pilD | 4876650..4877522 (-) | 873 | WP_010467582.1 | prepilin peptidase | Machinery gene |
| OU5_RS21795 (OU5_4365) | pilC | 4877524..4878741 (-) | 1218 | WP_010467583.1 | type II secretion system F family protein | Machinery gene |
| OU5_RS21800 (OU5_4366) | pilB | 4878744..4880444 (-) | 1701 | WP_010467584.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| OU5_RS21805 (OU5_4367) | pilA | 4880670..4881077 (+) | 408 | WP_010467585.1 | pilin | Machinery gene |
| OU5_RS21810 (OU5_4368) | - | 4881390..4881743 (+) | 354 | WP_010467586.1 | BON domain-containing protein | - |
| OU5_RS21815 (OU5_4369) | - | 4882029..4882325 (-) | 297 | WP_010467587.1 | DUF2845 domain-containing protein | - |
| OU5_RS21820 (OU5_4370) | - | 4882325..4885279 (-) | 2955 | WP_042932555.1 | DUF748 domain-containing protein | - |
Sequence
Protein
Download Length: 135 a.a. Molecular weight: 13770.94 Da Isoelectric Point: 8.1079
>NTDB_id=112651 OU5_RS21805 WP_010467585.1 4880670..4881077(+) (pilA) [Pseudomonas mandelii JR-1]
MNTQKGFTLIELLIVVAIIGILATFALPAYSKYQARAKVTAGLAEITALKVPFEDLMNSGTNPDLTKVGGTATTSNCTTT
AAGVATDGTGTIGCTILNAPGPVLSKTITLTRSLTGWTCATTVAQEYAPKGCTGV
MNTQKGFTLIELLIVVAIIGILATFALPAYSKYQARAKVTAGLAEITALKVPFEDLMNSGTNPDLTKVGGTATTSNCTTT
AAGVATDGTGTIGCTILNAPGPVLSKTITLTRSLTGWTCATTVAQEYAPKGCTGV
Nucleotide
Download Length: 408 bp
>NTDB_id=112651 OU5_RS21805 WP_010467585.1 4880670..4881077(+) (pilA) [Pseudomonas mandelii JR-1]
ATGAATACTCAAAAAGGTTTTACCCTGATCGAACTGCTGATCGTGGTGGCGATCATCGGGATTCTGGCGACGTTTGCGTT
GCCGGCTTATTCGAAGTATCAAGCGCGTGCCAAGGTGACGGCCGGTCTGGCAGAGATCACGGCGTTGAAAGTCCCGTTTG
AGGACCTCATGAACTCTGGTACCAATCCGGATCTGACAAAAGTGGGCGGAACCGCCACGACTTCCAATTGCACAACCACG
GCAGCGGGTGTCGCGACTGATGGTACCGGCACCATCGGTTGCACGATCCTTAACGCTCCAGGTCCGGTCTTGAGCAAAAC
CATTACCCTGACGCGCTCTCTGACTGGCTGGACTTGCGCCACCACAGTGGCTCAGGAGTACGCACCTAAAGGCTGCACAG
GCGTCTGA
ATGAATACTCAAAAAGGTTTTACCCTGATCGAACTGCTGATCGTGGTGGCGATCATCGGGATTCTGGCGACGTTTGCGTT
GCCGGCTTATTCGAAGTATCAAGCGCGTGCCAAGGTGACGGCCGGTCTGGCAGAGATCACGGCGTTGAAAGTCCCGTTTG
AGGACCTCATGAACTCTGGTACCAATCCGGATCTGACAAAAGTGGGCGGAACCGCCACGACTTCCAATTGCACAACCACG
GCAGCGGGTGTCGCGACTGATGGTACCGGCACCATCGGTTGCACGATCCTTAACGCTCCAGGTCCGGTCTTGAGCAAAAC
CATTACCCTGACGCGCTCTCTGACTGGCTGGACTTGCGCCACCACAGTGGCTCAGGAGTACGCACCTAAAGGCTGCACAG
GCGTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Acinetobacter baumannii strain A118 |
50 |
100 |
0.511 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
47.445 |
100 |
0.481 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
43.357 |
100 |
0.459 |
| pilA | Vibrio cholerae strain A1552 |
43.357 |
100 |
0.459 |
| pilA | Vibrio cholerae C6706 |
43.357 |
100 |
0.459 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
43.704 |
100 |
0.437 |
| pilA | Pseudomonas aeruginosa PAK |
39.597 |
100 |
0.437 |
| comP | Acinetobacter baylyi ADP1 |
35.374 |
100 |
0.385 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
36.879 |
100 |
0.385 |
| pilA2 | Legionella pneumophila str. Paris |
37.778 |
100 |
0.378 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
37.037 |
100 |
0.37 |