Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | OU5_RS00535 | Genome accession | NZ_CP005960 |
| Coordinates | 130550..131659 (+) | Length | 369 a.a. |
| NCBI ID | WP_010460865.1 | Uniprot ID | - |
| Organism | Pseudomonas mandelii JR-1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 125550..136659
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OU5_RS00520 (OU5_0104) | - | 126474..127406 (+) | 933 | WP_010460876.1 | sugar kinase | - |
| OU5_RS00525 (OU5_0105) | - | 127550..127825 (-) | 276 | WP_007898282.1 | peptidylprolyl isomerase | - |
| OU5_RS00530 (OU5_0106) | - | 127891..130428 (-) | 2538 | WP_010460868.1 | PAS domain-containing hybrid sensor histidine kinase/response regulator | - |
| OU5_RS00535 (OU5_0107) | pilU | 130550..131659 (+) | 1110 | WP_010460865.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| OU5_RS00540 (OU5_0108) | - | 131785..135645 (+) | 3861 | WP_010460863.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 369 a.a. Molecular weight: 40997.93 Da Isoelectric Point: 6.0924
>NTDB_id=112624 OU5_RS00535 WP_010460865.1 130550..131659(+) (pilU) [Pseudomonas mandelii JR-1]
MEIDALLQILSDRNGSDLYLSTGAPPSARFDGVLKPLTDQPFKPGAVAAIAESIMDAEQRLEFDRELEMNLAISLAGVGR
FRVNIFKQRNDVSIVARNIKLDIPRFEDLKLPAVLLETVMLKQGLILFVGATDCGKSTSLAALIDYRNRHSTGHIVTIED
PIEYIHRHKQSIINQREVGVDTRSFHAALKNTLRQAPDVVLIGEIRDRETMEHALAFADTGHLVISTLHAHNAHQALDRI
INFFPEERRTQLLHDLSNNLKAFVSQRLVRTLDGQRRAAVEVMLGTPTIGDLIRRNQLDELKDIMEKSAEFGMQTFDGAL
YALVMEGAISEEEALKHADSLSNLKLRLKLYGGGPSTANAPIGDWGLVD
MEIDALLQILSDRNGSDLYLSTGAPPSARFDGVLKPLTDQPFKPGAVAAIAESIMDAEQRLEFDRELEMNLAISLAGVGR
FRVNIFKQRNDVSIVARNIKLDIPRFEDLKLPAVLLETVMLKQGLILFVGATDCGKSTSLAALIDYRNRHSTGHIVTIED
PIEYIHRHKQSIINQREVGVDTRSFHAALKNTLRQAPDVVLIGEIRDRETMEHALAFADTGHLVISTLHAHNAHQALDRI
INFFPEERRTQLLHDLSNNLKAFVSQRLVRTLDGQRRAAVEVMLGTPTIGDLIRRNQLDELKDIMEKSAEFGMQTFDGAL
YALVMEGAISEEEALKHADSLSNLKLRLKLYGGGPSTANAPIGDWGLVD
Nucleotide
Download Length: 1110 bp
>NTDB_id=112624 OU5_RS00535 WP_010460865.1 130550..131659(+) (pilU) [Pseudomonas mandelii JR-1]
ATGGAAATCGATGCACTGTTGCAGATACTGTCTGACCGGAATGGATCCGATCTCTATCTTTCCACCGGCGCACCACCCAG
TGCGCGGTTCGACGGTGTGCTCAAGCCGCTGACCGACCAGCCATTCAAGCCGGGAGCAGTCGCGGCCATTGCCGAGTCCA
TCATGGACGCCGAACAGCGCCTGGAGTTCGATCGGGAACTGGAGATGAACCTGGCAATCTCCCTGGCGGGTGTCGGGCGC
TTTCGGGTCAACATCTTCAAGCAACGCAACGATGTGTCAATCGTGGCACGCAACATCAAGCTCGACATCCCGCGTTTCGA
AGACCTCAAACTACCGGCGGTGCTGCTCGAAACCGTGATGCTCAAACAAGGATTGATACTGTTCGTCGGCGCCACCGATT
GCGGCAAGTCAACCTCCCTCGCGGCGCTGATCGATTACCGCAACCGCCACAGCACTGGCCATATCGTCACCATCGAGGAC
CCGATCGAGTACATCCATCGGCACAAGCAGTCGATCATCAACCAGCGCGAGGTCGGCGTCGATACCCGCAGTTTTCATGC
TGCCCTGAAAAACACCCTGCGCCAGGCCCCGGACGTGGTACTGATCGGCGAAATCCGCGACCGCGAAACCATGGAGCACG
CGCTGGCGTTTGCCGATACGGGCCATCTGGTGATCTCGACGTTGCACGCGCACAACGCCCATCAGGCGCTGGACCGCATC
ATCAATTTCTTTCCCGAAGAGCGGCGGACGCAGTTGCTGCATGACTTGAGCAACAATCTGAAAGCGTTTGTTTCCCAACG
ATTGGTGCGGACCCTTGACGGTCAGCGCAGGGCGGCAGTGGAAGTGATGTTGGGAACACCCACGATCGGTGACTTGATAA
GGCGCAATCAACTGGACGAACTTAAAGACATCATGGAAAAGTCCGCAGAGTTCGGTATGCAGACGTTCGATGGCGCACTG
TATGCACTGGTGATGGAAGGCGCAATCAGTGAGGAAGAGGCGCTAAAACATGCGGACTCGCTGAGCAATCTGAAGTTGCG
CCTCAAGCTGTATGGCGGTGGGCCTTCGACCGCCAATGCGCCCATTGGGGACTGGGGGTTAGTGGATTGA
ATGGAAATCGATGCACTGTTGCAGATACTGTCTGACCGGAATGGATCCGATCTCTATCTTTCCACCGGCGCACCACCCAG
TGCGCGGTTCGACGGTGTGCTCAAGCCGCTGACCGACCAGCCATTCAAGCCGGGAGCAGTCGCGGCCATTGCCGAGTCCA
TCATGGACGCCGAACAGCGCCTGGAGTTCGATCGGGAACTGGAGATGAACCTGGCAATCTCCCTGGCGGGTGTCGGGCGC
TTTCGGGTCAACATCTTCAAGCAACGCAACGATGTGTCAATCGTGGCACGCAACATCAAGCTCGACATCCCGCGTTTCGA
AGACCTCAAACTACCGGCGGTGCTGCTCGAAACCGTGATGCTCAAACAAGGATTGATACTGTTCGTCGGCGCCACCGATT
GCGGCAAGTCAACCTCCCTCGCGGCGCTGATCGATTACCGCAACCGCCACAGCACTGGCCATATCGTCACCATCGAGGAC
CCGATCGAGTACATCCATCGGCACAAGCAGTCGATCATCAACCAGCGCGAGGTCGGCGTCGATACCCGCAGTTTTCATGC
TGCCCTGAAAAACACCCTGCGCCAGGCCCCGGACGTGGTACTGATCGGCGAAATCCGCGACCGCGAAACCATGGAGCACG
CGCTGGCGTTTGCCGATACGGGCCATCTGGTGATCTCGACGTTGCACGCGCACAACGCCCATCAGGCGCTGGACCGCATC
ATCAATTTCTTTCCCGAAGAGCGGCGGACGCAGTTGCTGCATGACTTGAGCAACAATCTGAAAGCGTTTGTTTCCCAACG
ATTGGTGCGGACCCTTGACGGTCAGCGCAGGGCGGCAGTGGAAGTGATGTTGGGAACACCCACGATCGGTGACTTGATAA
GGCGCAATCAACTGGACGAACTTAAAGACATCATGGAAAAGTCCGCAGAGTTCGGTATGCAGACGTTCGATGGCGCACTG
TATGCACTGGTGATGGAAGGCGCAATCAGTGAGGAAGAGGCGCTAAAACATGCGGACTCGCTGAGCAATCTGAAGTTGCG
CCTCAAGCTGTATGGCGGTGGGCCTTCGACCGCCAATGCGCCCATTGGGGACTGGGGGTTAGTGGATTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
55.556 |
95.122 |
0.528 |
| pilU | Acinetobacter baylyi ADP1 |
50.82 |
99.187 |
0.504 |
| pilU | Vibrio cholerae strain A1552 |
50.543 |
99.729 |
0.504 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
40.741 |
95.122 |
0.388 |
| pilT | Vibrio cholerae strain A1552 |
40.741 |
95.122 |
0.388 |
| pilT | Pseudomonas aeruginosa PAK |
40.116 |
93.225 |
0.374 |
| pilT | Pseudomonas stutzeri DSM 10701 |
39.826 |
93.225 |
0.371 |
| pilT | Legionella pneumophila strain Lp02 |
41.018 |
90.515 |
0.371 |
| pilT | Legionella pneumophila strain ERS1305867 |
41.018 |
90.515 |
0.371 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
39.233 |
91.87 |
0.36 |
| pilT | Acinetobacter baumannii D1279779 |
39.82 |
90.515 |
0.36 |
| pilT | Acinetobacter baumannii strain A118 |
39.82 |
90.515 |
0.36 |
| pilT | Acinetobacter nosocomialis M2 |
39.82 |
90.515 |
0.36 |