Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | EL167_RS08645 | Genome accession | NZ_LR134360 |
| Coordinates | 1839112..1839543 (-) | Length | 143 a.a. |
| NCBI ID | WP_047130975.1 | Uniprot ID | A0AB37HBH2 |
| Organism | Staphylococcus condimenti strain NCTC13827 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1804822..1848948 | 1839112..1839543 | within | 0 |
Gene organization within MGE regions
Location: 1804822..1848948
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL167_RS08395 (NCTC13827_01736) | - | 1804822..1806285 (-) | 1464 | WP_063164608.1 | SH3 domain-containing protein | - |
| EL167_RS08400 (NCTC13827_01737) | - | 1806282..1806758 (-) | 477 | WP_047133038.1 | phage holin | - |
| EL167_RS08405 (NCTC13827_01738) | - | 1806806..1807204 (-) | 399 | WP_063164609.1 | hypothetical protein | - |
| EL167_RS08410 (NCTC13827_01739) | - | 1807191..1807613 (-) | 423 | WP_047133029.1 | hypothetical protein | - |
| EL167_RS08415 (NCTC13827_01740) | - | 1807651..1807803 (-) | 153 | WP_082107888.1 | XkdX family protein | - |
| EL167_RS08420 (NCTC13827_01741) | - | 1807823..1808194 (-) | 372 | WP_047133028.1 | DUF2977 domain-containing protein | - |
| EL167_RS08425 (NCTC13827_01742) | - | 1808194..1809672 (-) | 1479 | WP_052766786.1 | BppU family phage baseplate upper protein | - |
| EL167_RS08430 (NCTC13827_01743) | - | 1809672..1811636 (-) | 1965 | WP_047133027.1 | right-handed parallel beta-helix repeat-containing protein | - |
| EL167_RS08435 (NCTC13827_01744) | - | 1811633..1811863 (-) | 231 | WP_047133026.1 | hypothetical protein | - |
| EL167_RS08440 (NCTC13827_01745) | - | 1811856..1813445 (-) | 1590 | WP_082107887.1 | prophage endopeptidase tail family protein | - |
| EL167_RS08445 (NCTC13827_01746) | - | 1813455..1814309 (-) | 855 | WP_082107886.1 | distal tail protein Dit | - |
| EL167_RS08450 (NCTC13827_01747) | - | 1814311..1818246 (-) | 3936 | Protein_1659 | phage tail tape measure protein | - |
| EL167_RS08455 (NCTC13827_01748) | - | 1818424..1819353 (-) | 930 | WP_047133023.1 | hypothetical protein | - |
| EL167_RS08460 (NCTC13827_01749) | - | 1819472..1820464 (-) | 993 | Protein_1661 | phage tail tape measure protein | - |
| EL167_RS12900 (NCTC13827_01750) | gpGT | 1820493..1820645 (-) | 153 | WP_156483152.1 | phage tail assembly chaperone GT | - |
| EL167_RS08465 (NCTC13827_01751) | gpG | 1820678..1821040 (-) | 363 | WP_047133021.1 | phage tail assembly chaperone G | - |
| EL167_RS08470 (NCTC13827_01752) | - | 1821100..1821279 (-) | 180 | WP_047133020.1 | hypothetical protein | - |
| EL167_RS08475 (NCTC13827_01753) | - | 1821299..1821922 (-) | 624 | WP_047133019.1 | major tail protein | - |
| EL167_RS08480 (NCTC13827_01754) | - | 1821934..1822344 (-) | 411 | WP_047133034.1 | hypothetical protein | - |
| EL167_RS08485 (NCTC13827_01755) | - | 1822350..1822739 (-) | 390 | WP_047133018.1 | hypothetical protein | - |
| EL167_RS08490 (NCTC13827_01756) | - | 1822729..1823097 (-) | 369 | WP_047133017.1 | hypothetical protein | - |
| EL167_RS08495 (NCTC13827_01757) | - | 1823081..1823368 (-) | 288 | WP_047133016.1 | hypothetical protein | - |
| EL167_RS08500 (NCTC13827_01758) | - | 1823386..1824597 (-) | 1212 | WP_047133015.1 | phage major capsid protein | - |
| EL167_RS08505 (NCTC13827_01759) | - | 1824609..1825316 (-) | 708 | WP_047133014.1 | head maturation protease, ClpP-related | - |
| EL167_RS08510 (NCTC13827_01760) | - | 1825279..1826457 (-) | 1179 | WP_047133013.1 | phage portal protein | - |
| EL167_RS08515 (NCTC13827_01761) | - | 1826473..1828143 (-) | 1671 | WP_047133012.1 | terminase TerL endonuclease subunit | - |
| EL167_RS08520 (NCTC13827_01762) | - | 1828140..1828502 (-) | 363 | WP_082107885.1 | hypothetical protein | - |
| EL167_RS08525 | - | 1828689..1829024 (-) | 336 | WP_047133032.1 | HNH endonuclease | - |
| EL167_RS08530 (NCTC13827_01764) | - | 1829708..1830154 (-) | 447 | WP_047133011.1 | transcriptional regulator | - |
| EL167_RS08535 (NCTC13827_01765) | - | 1830203..1830673 (-) | 471 | WP_047133010.1 | Holliday junction resolvase RecU | - |
| EL167_RS08540 (NCTC13827_01766) | - | 1830670..1830855 (-) | 186 | WP_232011926.1 | hypothetical protein | - |
| EL167_RS08545 (NCTC13827_01767) | rinB | 1830852..1831025 (-) | 174 | WP_047133009.1 | transcriptional activator RinB | - |
| EL167_RS12975 (NCTC13827_01768) | - | 1831022..1831255 (-) | 234 | WP_047133008.1 | DUF1381 domain-containing protein | - |
| EL167_RS12910 (NCTC13827_01769) | - | 1831267..1831443 (-) | 177 | WP_156483153.1 | hypothetical protein | - |
| EL167_RS08555 (NCTC13827_01770) | - | 1831458..1831664 (-) | 207 | WP_047133007.1 | helix-turn-helix transcriptional regulator | - |
| EL167_RS08560 (NCTC13827_01771) | - | 1831709..1832008 (-) | 300 | WP_063164612.1 | MazG-like family protein | - |
| EL167_RS08565 (NCTC13827_01772) | - | 1832001..1832222 (-) | 222 | WP_047132961.1 | hypothetical protein | - |
| EL167_RS08570 (NCTC13827_01773) | - | 1832223..1832465 (-) | 243 | WP_047132962.1 | hypothetical protein | - |
| EL167_RS08575 (NCTC13827_01774) | - | 1832462..1832656 (-) | 195 | WP_047132963.1 | hypothetical protein | - |
| EL167_RS08580 (NCTC13827_01775) | - | 1832646..1833047 (-) | 402 | WP_063164613.1 | YopX family protein | - |
| EL167_RS08585 (NCTC13827_01776) | - | 1833044..1833454 (-) | 411 | WP_047133049.1 | hypothetical protein | - |
| EL167_RS08590 (NCTC13827_01777) | - | 1833441..1833644 (-) | 204 | WP_063164614.1 | hypothetical protein | - |
| EL167_RS08595 (NCTC13827_01778) | - | 1833596..1834282 (-) | 687 | WP_174531717.1 | N-6 DNA methylase | - |
| EL167_RS08600 (NCTC13827_01779) | - | 1834282..1834734 (-) | 453 | WP_047130966.1 | nucleoside 2-deoxyribosyltransferase | - |
| EL167_RS08605 (NCTC13827_01780) | - | 1834727..1835224 (-) | 498 | WP_047130967.1 | DUF3310 domain-containing protein | - |
| EL167_RS08610 (NCTC13827_01781) | - | 1835225..1835746 (-) | 522 | WP_047130968.1 | hypothetical protein | - |
| EL167_RS08615 (NCTC13827_01782) | - | 1835749..1835937 (-) | 189 | WP_047130969.1 | hypothetical protein | - |
| EL167_RS08620 (NCTC13827_01783) | - | 1835912..1836142 (-) | 231 | WP_047130970.1 | hypothetical protein | - |
| EL167_RS08625 (NCTC13827_01784) | - | 1836139..1837374 (-) | 1236 | WP_408641260.1 | DnaB helicase C-terminal domain-containing protein | - |
| EL167_RS08630 (NCTC13827_01785) | - | 1837364..1837720 (-) | 357 | WP_047130972.1 | hypothetical protein | - |
| EL167_RS08635 (NCTC13827_01786) | - | 1837720..1838430 (-) | 711 | WP_047130973.1 | DnaD domain protein | - |
| EL167_RS08640 (NCTC13827_01787) | - | 1838417..1839100 (-) | 684 | WP_047130974.1 | putative HNHc nuclease | - |
| EL167_RS08645 (NCTC13827_01788) | ssbA | 1839112..1839543 (-) | 432 | WP_047130975.1 | single-stranded DNA-binding protein | Machinery gene |
| EL167_RS08650 (NCTC13827_01789) | - | 1839543..1840223 (-) | 681 | WP_047130976.1 | ERF family protein | - |
| EL167_RS08655 (NCTC13827_01790) | - | 1840224..1840709 (-) | 486 | WP_047130977.1 | siphovirus Gp157 family protein | - |
| EL167_RS08660 (NCTC13827_01791) | - | 1840709..1840918 (-) | 210 | WP_047130978.1 | hypothetical protein | - |
| EL167_RS12915 (NCTC13827_01792) | - | 1841001..1841165 (-) | 165 | WP_156483154.1 | hypothetical protein | - |
| EL167_RS08665 (NCTC13827_01793) | - | 1841162..1841392 (-) | 231 | WP_047130979.1 | DUF771 domain-containing protein | - |
| EL167_RS08670 (NCTC13827_01794) | - | 1841452..1841658 (+) | 207 | WP_046100574.1 | hypothetical protein | - |
| EL167_RS13075 | - | 1841661..1841747 (-) | 87 | Protein_1707 | hypothetical protein | - |
| EL167_RS12920 (NCTC13827_01795) | - | 1842065..1842265 (-) | 201 | WP_046100573.1 | hypothetical protein | - |
| EL167_RS08685 (NCTC13827_01796) | - | 1842277..1843044 (-) | 768 | WP_047130981.1 | phage regulatory protein/antirepressor Ant | - |
| EL167_RS08690 (NCTC13827_01797) | - | 1843058..1843282 (-) | 225 | WP_047130982.1 | helix-turn-helix transcriptional regulator | - |
| EL167_RS08695 (NCTC13827_01798) | - | 1843439..1843768 (+) | 330 | WP_047130983.1 | helix-turn-helix transcriptional regulator | - |
| EL167_RS08700 (NCTC13827_01799) | - | 1843783..1844250 (+) | 468 | WP_047130984.1 | ImmA/IrrE family metallo-endopeptidase | - |
| EL167_RS08705 (NCTC13827_01800) | - | 1844353..1844595 (+) | 243 | WP_047130985.1 | hypothetical protein | - |
| EL167_RS12925 (NCTC13827_01801) | - | 1844859..1845005 (+) | 147 | WP_156483155.1 | hypothetical protein | - |
| EL167_RS08710 (NCTC13827_01802) | - | 1845002..1845622 (-) | 621 | WP_063164615.1 | hypothetical protein | - |
| EL167_RS08715 (NCTC13827_01803) | - | 1845754..1846782 (+) | 1029 | WP_047132460.1 | tyrosine-type recombinase/integrase | - |
| EL167_RS08720 (NCTC13827_01804) | - | 1847458..1848399 (-) | 942 | WP_052766765.1 | HIRAN domain-containing protein | - |
| EL167_RS08725 (NCTC13827_01805) | - | 1848478..1848948 (-) | 471 | WP_052766764.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 143 a.a. Molecular weight: 15963.72 Da Isoelectric Point: 6.3579
>NTDB_id=1122260 EL167_RS08645 WP_047130975.1 1839112..1839543(-) (ssbA) [Staphylococcus condimenti strain NCTC13827]
MINRTILVGRLTRDPEFRTTPSGVSVATFTLAVNRTFKNAQGEREADFINCVVFRKQAENVDKYVSKGSQVGVDGRLQSR
SYENKEGNRVYVTEVVCDNVQFLETKGTQKQNGQQPKQSLSSQENPFANANGPIDISDDDLPF
MINRTILVGRLTRDPEFRTTPSGVSVATFTLAVNRTFKNAQGEREADFINCVVFRKQAENVDKYVSKGSQVGVDGRLQSR
SYENKEGNRVYVTEVVCDNVQFLETKGTQKQNGQQPKQSLSSQENPFANANGPIDISDDDLPF
Nucleotide
Download Length: 432 bp
>NTDB_id=1122260 EL167_RS08645 WP_047130975.1 1839112..1839543(-) (ssbA) [Staphylococcus condimenti strain NCTC13827]
ATGATAAACAGAACAATTTTAGTAGGAAGATTAACACGTGATCCAGAATTTAGAACAACGCCAAGCGGAGTATCAGTAGC
AACATTCACTTTAGCAGTTAATCGTACATTCAAAAACGCACAAGGCGAACGTGAAGCTGATTTCATTAACTGTGTTGTAT
TCCGTAAACAAGCGGAAAATGTTGACAAATATGTATCTAAAGGCAGTCAAGTAGGCGTAGATGGTCGCTTACAATCACGC
AGCTATGAAAATAAAGAAGGTAATCGCGTATACGTTACAGAAGTTGTATGTGACAACGTTCAATTCTTAGAAACAAAAGG
TACTCAAAAGCAGAATGGTCAACAACCTAAACAGTCATTAAGCAGTCAAGAAAATCCTTTTGCTAATGCTAATGGTCCTA
TTGATATTTCTGATGATGATCTTCCATTCTAG
ATGATAAACAGAACAATTTTAGTAGGAAGATTAACACGTGATCCAGAATTTAGAACAACGCCAAGCGGAGTATCAGTAGC
AACATTCACTTTAGCAGTTAATCGTACATTCAAAAACGCACAAGGCGAACGTGAAGCTGATTTCATTAACTGTGTTGTAT
TCCGTAAACAAGCGGAAAATGTTGACAAATATGTATCTAAAGGCAGTCAAGTAGGCGTAGATGGTCGCTTACAATCACGC
AGCTATGAAAATAAAGAAGGTAATCGCGTATACGTTACAGAAGTTGTATGTGACAACGTTCAATTCTTAGAAACAAAAGG
TACTCAAAAGCAGAATGGTCAACAACCTAAACAGTCATTAAGCAGTCAAGAAAATCCTTTTGCTAATGCTAATGGTCCTA
TTGATATTTCTGATGATGATCTTCCATTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
54.07 |
100 |
0.65 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
53.529 |
100 |
0.636 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.091 |
76.923 |
0.455 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
41.259 |
100 |
0.413 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
39.161 |
100 |
0.392 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
39.161 |
100 |
0.392 |
| ssbA | Streptococcus mutans UA159 |
39.161 |
100 |
0.392 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
38.462 |
100 |
0.385 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
38.462 |
100 |
0.385 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
38.462 |
100 |
0.385 |
| ssbB/cilA | Streptococcus mitis SK321 |
38.462 |
100 |
0.385 |
| ssb | Glaesserella parasuis strain SC1401 |
31.073 |
100 |
0.385 |
| ssb | Neisseria meningitidis MC58 |
31.395 |
100 |
0.378 |
| ssb | Neisseria gonorrhoeae MS11 |
31.395 |
100 |
0.378 |