Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   EL116_RS07955 Genome accession   NZ_LR134304
Coordinates   1623765..1624076 (-) Length   103 a.a.
NCBI ID   WP_047532019.1    Uniprot ID   A0A2K4AH95
Organism   Staphylococcus schweitzeri strain NCTC13712     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1618765..1629076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL116_RS07920 (NCTC13712_01534) gcvPA 1619268..1620614 (-) 1347 WP_047425698.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  EL116_RS07925 (NCTC13712_01535) gcvT 1620633..1621724 (-) 1092 WP_047532011.1 glycine cleavage system aminomethyltransferase GcvT -
  EL116_RS07930 - 1621881..1622405 (-) 525 WP_047549198.1 shikimate kinase -
  EL116_RS07935 - 1622392..1622541 (-) 150 WP_078101697.1 hypothetical protein -
  EL116_RS07940 (NCTC13712_01537) comGF 1622640..1623095 (-) 456 WP_078101690.1 competence type IV pilus minor pilin ComGF Machinery gene
  EL116_RS07945 (NCTC13712_01538) comGE 1623055..1623354 (-) 300 WP_047532015.1 hypothetical protein Machinery gene
  EL116_RS07950 (NCTC13712_01539) comGD 1623341..1623787 (-) 447 WP_078101689.1 competence type IV pilus minor pilin ComGD Machinery gene
  EL116_RS07955 (NCTC13712_01540) comGC 1623765..1624076 (-) 312 WP_047532019.1 competence type IV pilus major pilin ComGC Machinery gene
  EL116_RS07960 (NCTC13712_01541) comGB 1624090..1625160 (-) 1071 WP_047532021.1 competence type IV pilus assembly protein ComGB Machinery gene
  EL116_RS07965 (NCTC13712_01542) comGA 1625132..1626106 (-) 975 WP_047425712.1 competence type IV pilus ATPase ComGA Machinery gene
  EL116_RS07970 (NCTC13712_01543) - 1626158..1626781 (-) 624 WP_047549195.1 MBL fold metallo-hydrolase -
  EL116_RS07975 (NCTC13712_01544) - 1626778..1627107 (-) 330 WP_047532027.1 MTH1187 family thiamine-binding protein -
  EL116_RS07980 (NCTC13712_01545) - 1627107..1628093 (-) 987 WP_047532029.1 ROK family glucokinase -
  EL116_RS07985 - 1628093..1628293 (-) 201 WP_047425719.1 YqgQ family protein -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 11201.34 Da        Isoelectric Point: 9.1992

>NTDB_id=1120779 EL116_RS07955 WP_047532019.1 1623765..1624076(-) (comGC) [Staphylococcus schweitzeri strain NCTC13712]
MLKVIKKAKAFTLIEMLLVLLIISLLLILIIPNIAKQTSHIQATGCNAQVKMVNSQIEAYALKHNRNPSSIDELVADGFI
KEAQKTCKSGEIISISNGEAIAN

Nucleotide


Download         Length: 312 bp        

>NTDB_id=1120779 EL116_RS07955 WP_047532019.1 1623765..1624076(-) (comGC) [Staphylococcus schweitzeri strain NCTC13712]
ATGTTGAAAGTAATTAAAAAAGCAAAGGCATTTACTTTAATAGAAATGTTATTAGTTCTGTTAATTATAAGTTTATTATT
AATATTAATTATTCCTAACATTGCTAAACAAACATCTCATATCCAAGCTACTGGATGTAATGCACAGGTGAAAATGGTTA
ATAGTCAAATCGAAGCATATGCATTGAAGCACAATAGAAATCCTTCTTCAATTGATGAATTAGTAGCTGATGGATTTATT
AAAGAGGCACAAAAAACATGTAAATCTGGTGAGATAATTTCTATTAGTAATGGAGAAGCCATTGCAAATTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(6-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K4AH95

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

87.379

100

0.874
  comGC Staphylococcus aureus N315

87.379

100

0.874
  comGC/cglC Streptococcus pneumoniae TIGR4

46.078

99.029

0.456
  comGC/cglC Streptococcus mitis SK321

51.163

83.495

0.427
  comGC/cglC Streptococcus mitis NCTC 12261

51.163

83.495

0.427
  comGC/cglC Streptococcus pneumoniae R6

50

83.495

0.417
  comGC/cglC Streptococcus pneumoniae Rx1

50

83.495

0.417
  comGC/cglC Streptococcus pneumoniae D39

50

83.495

0.417
  comYC Streptococcus mutans UA159

48.235

82.524

0.398
  comYC Streptococcus mutans UA140

48.235

82.524

0.398
  comYC Streptococcus suis isolate S10

51.282

75.728

0.388
  comGC Lactococcus lactis subsp. cremoris KW2

47.561

79.612

0.379
  comYC Streptococcus gordonii str. Challis substr. CH1

48.718

75.728

0.369
  comGC Bacillus subtilis subsp. subtilis str. 168

41.758

88.35

0.369

Multiple sequence alignment