Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   EL116_RS07950 Genome accession   NZ_LR134304
Coordinates   1623341..1623787 (-) Length   148 a.a.
NCBI ID   WP_078101689.1    Uniprot ID   -
Organism   Staphylococcus schweitzeri strain NCTC13712     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1618341..1628787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL116_RS07920 (NCTC13712_01534) gcvPA 1619268..1620614 (-) 1347 WP_047425698.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  EL116_RS07925 (NCTC13712_01535) gcvT 1620633..1621724 (-) 1092 WP_047532011.1 glycine cleavage system aminomethyltransferase GcvT -
  EL116_RS07930 - 1621881..1622405 (-) 525 WP_047549198.1 shikimate kinase -
  EL116_RS07935 - 1622392..1622541 (-) 150 WP_078101697.1 hypothetical protein -
  EL116_RS07940 (NCTC13712_01537) comGF 1622640..1623095 (-) 456 WP_078101690.1 competence type IV pilus minor pilin ComGF Machinery gene
  EL116_RS07945 (NCTC13712_01538) comGE 1623055..1623354 (-) 300 WP_047532015.1 hypothetical protein Machinery gene
  EL116_RS07950 (NCTC13712_01539) comGD 1623341..1623787 (-) 447 WP_078101689.1 competence type IV pilus minor pilin ComGD Machinery gene
  EL116_RS07955 (NCTC13712_01540) comGC 1623765..1624076 (-) 312 WP_047532019.1 competence type IV pilus major pilin ComGC Machinery gene
  EL116_RS07960 (NCTC13712_01541) comGB 1624090..1625160 (-) 1071 WP_047532021.1 competence type IV pilus assembly protein ComGB Machinery gene
  EL116_RS07965 (NCTC13712_01542) comGA 1625132..1626106 (-) 975 WP_047425712.1 competence type IV pilus ATPase ComGA Machinery gene
  EL116_RS07970 (NCTC13712_01543) - 1626158..1626781 (-) 624 WP_047549195.1 MBL fold metallo-hydrolase -
  EL116_RS07975 (NCTC13712_01544) - 1626778..1627107 (-) 330 WP_047532027.1 MTH1187 family thiamine-binding protein -
  EL116_RS07980 (NCTC13712_01545) - 1627107..1628093 (-) 987 WP_047532029.1 ROK family glucokinase -
  EL116_RS07985 - 1628093..1628293 (-) 201 WP_047425719.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17439.62 Da        Isoelectric Point: 10.1685

>NTDB_id=1120778 EL116_RS07950 WP_078101689.1 1623341..1623787(-) (comGD) [Staphylococcus schweitzeri strain NCTC13712]
MEKPLQIRKQQAFTLIEMLVAMMIVSCFLLLTMTSNRLNDFKVINDETNIISLITELNYLKSKAIANQSFINVRFYENSD
TIKVIEKNKFYYLKLKVGKIINVTKVDSIYFDKHGNVNKFGSISIEKNNMVYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=1120778 EL116_RS07950 WP_078101689.1 1623341..1623787(-) (comGD) [Staphylococcus schweitzeri strain NCTC13712]
ATGGAGAAGCCATTGCAAATTAGAAAACAGCAGGCATTTACTCTTATTGAAATGCTTGTTGCAATGATGATTGTTAGTTG
TTTTCTTCTATTGACTATGACATCAAATAGGCTAAACGATTTCAAAGTTATCAATGATGAAACGAATATCATTTCATTAA
TTACTGAATTGAATTATCTTAAATCAAAAGCAATCGCTAATCAAAGTTTTATTAATGTAAGATTTTATGAAAATAGTGAC
ACAATTAAAGTGATTGAGAAAAATAAGTTTTATTATTTAAAATTAAAAGTTGGGAAAATAATTAATGTTACGAAAGTGGA
TTCGATTTATTTTGATAAACATGGAAACGTTAATAAATTTGGGAGCATTTCGATTGAAAAAAACAACATGGTTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAATTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

77.027

100

0.77
  comGD Staphylococcus aureus N315

77.027

100

0.77

Multiple sequence alignment