Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   EL116_RS07940 Genome accession   NZ_LR134304
Coordinates   1622640..1623095 (-) Length   151 a.a.
NCBI ID   WP_078101690.1    Uniprot ID   A0A2K4AGD6
Organism   Staphylococcus schweitzeri strain NCTC13712     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1617640..1628095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL116_RS07915 (NCTC13712_01533) gcvPB 1617803..1619275 (-) 1473 WP_047549201.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -
  EL116_RS07920 (NCTC13712_01534) gcvPA 1619268..1620614 (-) 1347 WP_047425698.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  EL116_RS07925 (NCTC13712_01535) gcvT 1620633..1621724 (-) 1092 WP_047532011.1 glycine cleavage system aminomethyltransferase GcvT -
  EL116_RS07930 - 1621881..1622405 (-) 525 WP_047549198.1 shikimate kinase -
  EL116_RS07935 - 1622392..1622541 (-) 150 WP_078101697.1 hypothetical protein -
  EL116_RS07940 (NCTC13712_01537) comGF 1622640..1623095 (-) 456 WP_078101690.1 competence type IV pilus minor pilin ComGF Machinery gene
  EL116_RS07945 (NCTC13712_01538) comGE 1623055..1623354 (-) 300 WP_047532015.1 hypothetical protein Machinery gene
  EL116_RS07950 (NCTC13712_01539) comGD 1623341..1623787 (-) 447 WP_078101689.1 competence type IV pilus minor pilin ComGD Machinery gene
  EL116_RS07955 (NCTC13712_01540) comGC 1623765..1624076 (-) 312 WP_047532019.1 competence type IV pilus major pilin ComGC Machinery gene
  EL116_RS07960 (NCTC13712_01541) comGB 1624090..1625160 (-) 1071 WP_047532021.1 competence type IV pilus assembly protein ComGB Machinery gene
  EL116_RS07965 (NCTC13712_01542) comGA 1625132..1626106 (-) 975 WP_047425712.1 competence type IV pilus ATPase ComGA Machinery gene
  EL116_RS07970 (NCTC13712_01543) - 1626158..1626781 (-) 624 WP_047549195.1 MBL fold metallo-hydrolase -
  EL116_RS07975 (NCTC13712_01544) - 1626778..1627107 (-) 330 WP_047532027.1 MTH1187 family thiamine-binding protein -
  EL116_RS07980 (NCTC13712_01545) - 1627107..1628093 (-) 987 WP_047532029.1 ROK family glucokinase -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 17317.63 Da        Isoelectric Point: 10.0160

>NTDB_id=1120776 EL116_RS07940 WP_078101690.1 1622640..1623095(-) (comGF) [Staphylococcus schweitzeri strain NCTC13712]
MKILQNLKNVFNIKIKAFSLIEMILAMMTISIILLIVPGTIKISKTFLNESKDLTSVDFEFFASDLIDDFKTIDRKQIEI
KPHSILINKTNEQIEYKLLNNKIIKTINDKGNITMLNNVLSFSIDKDQDAILRISISLKDGALIRNKIMFV

Nucleotide


Download         Length: 456 bp        

>NTDB_id=1120776 EL116_RS07940 WP_078101690.1 1622640..1623095(-) (comGF) [Staphylococcus schweitzeri strain NCTC13712]
ATGAAAATTCTTCAAAATTTAAAGAATGTATTCAATATTAAAATAAAAGCTTTTTCGTTAATTGAAATGATATTAGCGAT
GATGACAATAAGTATTATTTTACTAATTGTACCTGGCACAATAAAAATAAGTAAGACGTTTTTAAATGAGAGCAAAGATT
TAACAAGTGTTGATTTTGAATTCTTTGCAAGTGACCTAATTGATGATTTTAAAACAATAGATAGAAAACAAATTGAAATT
AAACCACATAGCATCCTTATTAATAAAACAAACGAGCAAATTGAGTATAAATTATTGAATAATAAAATTATAAAAACAAT
TAATGATAAGGGGAATATAACGATGTTAAATAATGTCCTGTCATTTTCGATTGATAAAGATCAAGATGCTATTTTGCGAA
TATCAATATCATTAAAAGATGGTGCATTAATACGTAATAAAATAATGTTTGTTTAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(49-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K4AGD6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus MW2

56.25

95.364

0.536
  comGF Staphylococcus aureus N315

54.167

95.364

0.517

Multiple sequence alignment