Detailed information NTG1119951

Bioinformatically predicted

Overview

• Name: comYC
• Type: Machinery gene
• Locus tag: EL078_RS00700
• Genome accession: NZ_LR134282
• Coordinates: 103990..104292 (+)
• Length: 100 a.a.
• NCBI ID: WP_021141433.1
• Uniprot ID: -
• Organism: Streptococcus equinus strain NCTC8140
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 98990..109292

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL078_RS00685 (NCTC8140_00136)	-	101645..102013 (+)	369	WP_021141429.1	DUF1033 family protein	-
EL078_RS00690 (NCTC8140_00137)	comYA	102082..103023 (+)	942	WP_027968018.1	competence type IV pilus ATPase ComGA	Machinery gene
EL078_RS00695 (NCTC8140_00138)	comYB	102947..103990 (+)	1044	WP_164554342.1	competence type IV pilus assembly protein ComGB	Machinery gene
EL078_RS00700 (NCTC8140_00139)	comYC	103990..104292 (+)	303	WP_021141433.1	competence type IV pilus major pilin ComGC	Machinery gene
EL078_RS00705 (NCTC8140_00140)	comGD	104267..104707 (+)	441	WP_126437530.1	competence type IV pilus minor pilin ComGD	-
EL078_RS00710 (NCTC8140_00141)	comGE	104661..104954 (+)	294	WP_039697664.1	competence type IV pilus minor pilin ComGE	-
EL078_RS00715 (NCTC8140_00142)	comYF	104938..105375 (+)	438	WP_126437531.1	competence type IV pilus minor pilin ComGF	Machinery gene
EL078_RS00720 (NCTC8140_00143)	comGG	105362..105697 (+)	336	WP_003067902.1	competence type IV pilus minor pilin ComGG	-
EL078_RS00725 (NCTC8140_00144)	comYH	105751..106707 (+)	957	WP_024344497.1	class I SAM-dependent methyltransferase	Machinery gene
EL078_RS00730 (NCTC8140_00145)	-	106761..107960 (+)	1200	WP_045798327.1	acetate kinase	-
EL078_RS00735 (NCTC8140_00146)	-	108118..108315 (+)	198	WP_021141442.1	helix-turn-helix transcriptional regulator	-
EL078_RS00740 (NCTC8140_00147)	-	108370..108822 (+)	453	WP_126437532.1	ABC transporter permease	-

Sequence

Protein

• Length: 100 a.a.
• Molecular weight: 11429.64 Da
• Isoelectric Point: 10.1648

>NTDB_id=1119951 EL078_RS00700 WP_021141433.1 103990..104292(+) (comYC) [Streptococcus equinus strain NCTC8140]
MKKLWKKLRKKSVEAFTLVEMLIVLLIIGVLMLLFVPNLSKQKEAIHEKGDAAVVKVVESQKELYEVKTGKEATIKDLVK
EGYISQQQAQTYNEKAKPKE

Nucleotide

• Length: 303 bp

>NTDB_id=1119951 EL078_RS00700 WP_021141433.1 103990..104292(+) (comYC) [Streptococcus equinus strain NCTC8140]
ATGAAAAAACTATGGAAAAAATTACGTAAAAAATCTGTTGAAGCTTTCACACTTGTGGAGATGTTGATTGTCCTGTTAAT
CATCGGTGTCTTGATGCTTTTATTTGTACCGAATTTGAGTAAGCAAAAAGAGGCGATTCATGAAAAAGGTGATGCAGCTG
TTGTGAAAGTTGTCGAAAGTCAGAAAGAACTTTACGAAGTCAAAACAGGAAAAGAAGCAACTATTAAAGATTTGGTAAAA
GAAGGCTATATTTCACAGCAACAAGCTCAAACGTATAATGAAAAAGCTAAACCTAAAGAATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (13-34)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYC	Streptococcus gordonii str. Challis substr. CH1	68.539	89	0.61
comGC/cglC	Streptococcus mitis SK321	60.638	94	0.57
comYC	Streptococcus suis isolate S10	63.636	88	0.56
comGC/cglC	Streptococcus pneumoniae D39	59.574	94	0.56
comGC/cglC	Streptococcus pneumoniae R6	59.574	94	0.56
comGC/cglC	Streptococcus pneumoniae TIGR4	59.574	94	0.56
comGC/cglC	Streptococcus mitis NCTC 12261	59.574	94	0.56
comGC/cglC	Streptococcus pneumoniae Rx1	59.574	94	0.56
comYC	Streptococcus mutans UA140	57.303	89	0.51
comYC	Streptococcus mutans UA159	57.303	89	0.51
comGC	Lactococcus lactis subsp. cremoris KW2	50	90	0.45
comGC	Staphylococcus aureus MW2	44.186	86	0.38
comGC	Staphylococcus aureus N315	44.186	86	0.38