Detailed information NTG1119952

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: EL078_RS00715
• Genome accession: NZ_LR134282
• Coordinates: 104938..105375 (+)
• Length: 145 a.a.
• NCBI ID: WP_126437531.1
• Uniprot ID: -
• Organism: Streptococcus equinus strain NCTC8140
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 99938..110375

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL078_RS00685 (NCTC8140_00136)	-	101645..102013 (+)	369	WP_021141429.1	DUF1033 family protein	-
EL078_RS00690 (NCTC8140_00137)	comYA	102082..103023 (+)	942	WP_027968018.1	competence type IV pilus ATPase ComGA	Machinery gene
EL078_RS00695 (NCTC8140_00138)	comYB	102947..103990 (+)	1044	WP_164554342.1	competence type IV pilus assembly protein ComGB	Machinery gene
EL078_RS00700 (NCTC8140_00139)	comYC	103990..104292 (+)	303	WP_021141433.1	competence type IV pilus major pilin ComGC	Machinery gene
EL078_RS00705 (NCTC8140_00140)	comGD	104267..104707 (+)	441	WP_126437530.1	competence type IV pilus minor pilin ComGD	-
EL078_RS00710 (NCTC8140_00141)	comGE	104661..104954 (+)	294	WP_039697664.1	competence type IV pilus minor pilin ComGE	-
EL078_RS00715 (NCTC8140_00142)	comYF	104938..105375 (+)	438	WP_126437531.1	competence type IV pilus minor pilin ComGF	Machinery gene
EL078_RS00720 (NCTC8140_00143)	comGG	105362..105697 (+)	336	WP_003067902.1	competence type IV pilus minor pilin ComGG	-
EL078_RS00725 (NCTC8140_00144)	comYH	105751..106707 (+)	957	WP_024344497.1	class I SAM-dependent methyltransferase	Machinery gene
EL078_RS00730 (NCTC8140_00145)	-	106761..107960 (+)	1200	WP_045798327.1	acetate kinase	-
EL078_RS00735 (NCTC8140_00146)	-	108118..108315 (+)	198	WP_021141442.1	helix-turn-helix transcriptional regulator	-
EL078_RS00740 (NCTC8140_00147)	-	108370..108822 (+)	453	WP_126437532.1	ABC transporter permease	-
EL078_RS00745 (NCTC8140_00148)	-	108834..109469 (+)	636	WP_027968028.1	CPBP family intramembrane glutamic endopeptidase	-
EL078_RS00750 (NCTC8140_00149)	proC	109521..110291 (-)	771	WP_024344501.1	pyrroline-5-carboxylate reductase	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16646.92 Da
• Isoelectric Point: 5.2435

>NTDB_id=1119952 EL078_RS00715 WP_126437531.1 104938..105375(+) (comYF) [Streptococcus equinus strain NCTC8140]
MLRRTRLKAFTLLESLVALLVISGTVLVYQGLTQSISQNVYYLSDNEENEWLLFSQQLRLELERCHLDCVSDNKLYVSKD
DKKLAYGLSKADDFRKTNASGQGYQPMLFGVNSSSIRQDGNNILIKLRMDNGMEREFVYTFDEAS

Nucleotide

• Length: 438 bp

>NTDB_id=1119952 EL078_RS00715 WP_126437531.1 104938..105375(+) (comYF) [Streptococcus equinus strain NCTC8140]
ATGTTAAGAAGAACTAGACTAAAAGCTTTTACGTTACTTGAAAGTTTGGTTGCTTTGCTGGTTATTTCAGGGACAGTTCT
GGTTTATCAAGGGCTAACGCAGTCAATTTCACAAAATGTTTATTACTTGTCTGATAACGAAGAAAATGAGTGGCTTTTAT
TTTCTCAGCAGCTACGCTTAGAATTAGAGCGATGCCACTTAGATTGTGTTTCTGACAATAAACTTTATGTTAGTAAGGAT
GATAAGAAATTAGCTTATGGGCTATCAAAAGCAGATGATTTTCGTAAAACAAATGCTTCTGGTCAAGGCTATCAGCCAAT
GTTATTTGGTGTTAATTCTTCTAGCATTCGTCAGGATGGTAATAATATTTTGATTAAGCTGCGAATGGATAATGGTATGG
AGAGAGAGTTTGTTTACACTTTTGATGAGGCAAGTTAG

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (42-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	55	96.552	0.531
comYF	Streptococcus mutans UA159	54.286	96.552	0.524
comGF	Lactococcus lactis subsp. cremoris KW2	47.826	95.172	0.455
comGF/cglF	Streptococcus pneumoniae Rx1	47.101	95.172	0.448
comGF/cglF	Streptococcus pneumoniae D39	47.101	95.172	0.448
comGF/cglF	Streptococcus pneumoniae R6	47.101	95.172	0.448
comGF/cglF	Streptococcus pneumoniae TIGR4	47.101	95.172	0.448
comGF/cglF	Streptococcus mitis NCTC 12261	45.324	95.862	0.434
comGF/cglF	Streptococcus mitis SK321	44.604	95.862	0.428